Non-Coding RNA Search

Ss1.1-Pig4-TMW8038P19.5

Sequence:


               
               CGCGGCCGCCGCCTCTGCAGGGAACGGGGCCGGAGCGGGCTCTGGAGCTGAGGTGCCCGG
CGCCGGGGCGGTTTCGGTTGCGGGGCCCCCGGGGGCGGCCGGGCCGGGCCCCGGGCAGCT
GTGTTGTTTGCGGGAGGACGGCGAGCGGTGCAGCCGGGCGGCGGGCAACGCCAGCTTCAG
CAAGAGGATCCAGAAGAGCATCTCTCAGAAGAAGGTGAAGATCGAGCTGGATAAGAGCGC
AAGACATCTTTACATTTGTGATTATCATAAAAACTTAATTCAGAGCGTTCGAAACAGAAG
AAAGAGAAAAGGGAGTGATGATGATGGAGGAGATTCACCTGTTCAAGATATTGATACTCC
AGAGGTTGACTTATACCAATTACAAGTAAATACACTTAGGAGATACAAAAGACACTTCAA
ACTCCCAACCAGACCAGGACTTAATAAAGCACAGCTTGTCGAGATAGTTGGTTGCCACTT
TAGGTCTATTCCAGTGAATGAAAAAGACACCTTAACATATTTCATCTACTCAGTGAAGAA
TGACAAGAACAAATCAGATCTCAAGGTTGATAGTGGTGTTCACTAGGAGAGATGGAATTG
AGACTAAGACTTGGATGTTCAGATGTTAAGACTGCTTATTGTTTTTTCACGTGTAGAAAT
GTTCCTTGTGTATTTTTTCTAAAGAGGATTTTCTCTGGTTTTATTTTCTTTGTTTCTGAC
TCAAATAATTAGTTGGAAACTCATGTAAAATGAGCTTTCCTACATTAAAAAATATTTTAA
ATAAAGGTTATTACTATTATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCCGCCGCCTCTGCAGGGAACGGGGCCGGAGCGGGCTCTGGAGCTGAGGTGCCCGG
CGCCGGGGCGGTTTCGGTTGCGGGGCCCCCGGGGGCGGCCGGGCCGGGCCCCGGGCAGCT
GTGTTGTTTGCGGGAGGACGGCGAGCGGTGCAGCCGGGCGGCGGGCAACGCCAGCTTCAG
CAAGAGGATCCAGAAGAGCATCTCTCAGAAGAAGGTGAAGATCGAGCTGGATAAGAGCGC
AAGACATCTTTACATTTGTGATTATCATAAAAACTTAATTCAGAGCGTTCGAAACAGAAG
AAAGAGAAAAGGGAGTGATGATGATGGAGGAGATTCACCTGTTCAAGATATTGATACTCC
AGAGGTTGACTTATACCAATTACAAGTAAATACACTTAGGAGATACAAAAGACACTTCAA
ACTCCCAACCAGACCAGGACTTAATAAAGCACAGCTTGTCGAGATAGTTGGTTGCCACTT
TAGGTCTATTCCAGTGAATGAAAAAGACACCTTAACATATTTCATCTACTCAGTGAAGAA
TGACAAGAACAAATCAGATCTCAAGGTTGATAGTGGTGTTCACTAGGAGAGATGGAATTG
AGACTAAGACTTGGATGTTCAGATGTTAAGACTGCTTATTGTTTTTTCACGTGTAGAAAT
GTTCCTTGTGTATTTTTTCTAAAGAGGATTTTCTCTGGTTTTATTTTCTTTGTTTCTGAC
TCAAATAATTAGTTGGAAACTCATGTAAAATGAGCTTTCCTACATTAAAAAATATTTTAA
ATAAAGGTTATTACTATTATAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12406963|emb|CAC24848.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12406963|emb|CAC24848.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-548, gnl|bosTau2|chr23 (20602576-20602060)
               

               
               23-548, gnl|Hg17|chr5 (153806333-153815737)
               

               
               23-548, gnl|Mm7|chr11 (57883612-57891571)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-548, gnl|bosTau2|chr23 (20602576-20602060)
               

               
               23-548, gnl|Hg17|chr5 (153806333-153815737)
               

               
               23-548, gnl|Mm7|chr11 (57883612-57891571)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               thg (0.380373)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	23-548, gnl\|bosTau2\|chr23 (20602576-20602060)
	23-548, gnl\|Hg17\|chr5 (153806333-153815737)
	23-548, gnl\|Mm7\|chr11 (57883612-57891571)

	thg (0.380373)
	ova (0.258264)
	bla (0.248694)
	hea (0.204499)
	aor (0.195274)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	cje (0.165235)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	csk (0.140746)
	ese (0.126502)
	tra (0.123092)