Ss1.1-Pig4-TMW8039A05.3
|
GTTGTTATGTGGCTCAACCAGAACTTTCTGTTACCAGAGGACACAAACATTCAGAATGCT
CCATTTCAAGTGTGTTTCACATCCTTACGAAATGGTGACCAGCTGTTTATAAAAATAAAA
CTTAGTGGAGAGATCACTATAAATACTGATGATATTGATTTGGCTGGTGACATCATACAG
TCGATGGCATCATTTTTTGGTATTGAAGACCTTCAGGTAGAAGCGGATTTCCCTGTCTAC
TTTGAAGAATTACGAAAGGTGCTGGTTAAGGTTGATGAATATCACTCAGTCCATCAGAAG
CTCAGTGCTGACATGGCTGATAATTCTAATCTGATCCGAAGTTTACTGGTCCGAGCTGAG
GATGCTCGTCTGATGAGGGACATGAAAACAATGAAGAGTCGCTATATGGAACTTTATGAC
CTTAATAAAGACTTGCTAAATGGATATAAAATTCGCTGTAACAATCACACAGAGCTCTTG
GGAAGCCTCAAAGCAGTAAATCAAGCGATTCAAAGAGCAGGTCGTCTGCGTGTTGGAAAA
CCAAAGAACCAGGTGATCAGTGCTTGTCGGGATGCCATTCGAAGCAACAACATCAACACG
CTTTTCCGAATCATGCGGGTGGGGACAGCTTCTTCGTAGGAGAGGAGAGAATAGGTAACC
AAGTTCCTCAAAAGGATTTTTCTTTAAACATCTAGGCTGGTTTGCTTTGGGTCACATCCT
CGTGAACCCAAGGTGCTAGGAGTGAAAACAACCTTGGTGAGTTGTACAAGTGAAAAAAAG
CATTTGTTTCTGAAAAGTGTCCCCAATTTATTTTTCTGTAAAAAGTCAGTAGTACTGTTG
CCATATAATACTAGGTTTGTATGGAGATAACCGAATACTTTTGAAACATTATGGATTCAA
AGTCGTTTTTCTGTATGTGTGTAAAATGGTATGTAGATACGTCTTTTTTCTTGAAATTGT
TACTGAATTTGTAATTAAAAATAGATTATCTACTTTTTCATTAAAATTTAAAAGTGCTGC
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTGTTATGTGGCTCAACCAGAACTTTCTGTTACCAGAGGACACAAACATTCAGAATGCT
CCATTTCAAGTGTGTTTCACATCCTTACGAAATGGTGACCAGCTGTTTATAAAAATAAAA
CTTAGTGGAGAGATCACTATAAATACTGATGATATTGATTTGGCTGGTGACATCATACAG
TCGATGGCATCATTTTTTGGTATTGAAGACCTTCAGGTAGAAGCGGATTTCCCTGTCTAC
TTTGAAGAATTACGAAAGGTGCTGGTTAAGGTTGATGAATATCACTCAGTCCATCAGAAG
CTCAGTGCTGACATGGCTGATAATTCTAATCTGATCCGAAGTTTACTGGTCCGAGCTGAG
GATGCTCGTCTGATGAGGGACATGAAAACAATGAAGAGTCGCTATATGGAACTTTATGAC
CTTAATAAAGACTTGCTAAATGGATATAAAATTCGCTGTAACAATCACACAGAGCTCTTG
GGAAGCCTCAAAGCAGTAAATCAAGCGATTCAAAGAGCAGGTCGTCTGCGTGTTGGAAAA
CCAAAGAACCAGGTGATCAGTGCTTGTCGGGATGCCATTCGAAGCAACAACATCAACACG
CTTTTCCGAATCATGCGGGTGGGGACAGCTTCTTCGTAGGAGAGGAGAGAATAGGTAACC
AAGTTCCTCAAAAGGATTTTTCTTTAAACATCTAGGCTGGTTTGCTTTGGGTCACATCCT
CGTGAACCCAAGGTGCTAGGAGTGAAAACAACCTTGGTGAGTTGTACAAGTGAAAAAAAG
CATTTGTTTCTGAAAAGTGTCCCCAATTTATTTTTCTGTAAAAAGTCAGTAGTACTGTTG
CCATATAATACTAGGTTTGTATGGAGATAACCGAATACTTTTGAAACATTATGGATTCAA
AGTCGTTTTTCTGTATGTGTGTAAAATGGTATGTAGATACGTCTTTTTTCTTGAAATTGT
TACTGAATTTGTAATTAAAAATAGATTATCTACTTTTTCATTAAAATTTAAAAGTGCTGC
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|61853827|ref|XP_613071.1| |
Protein identifier
|
gi|61853827|ref|XP_613071.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
125-272, gnl|bosTau2|chr18 (23969946-23969799) |
|
125-272, gnl|canFam2|chr2 (62576633-62576465) |
|
125-272, gnl|danRer3|chr18 (18695103-18695258) |
|
125-272, gnl|echTel1|scaffold_311872 (41683-41840) |
|
125-272, gnl|galGal2|chr11 (2037524-2037360) |
|
125-272, gnl|hg17|chr16 (55089128-55089296) |
|
125-272, gnl|Hg17|chr16 (55089301-55089154) |
|
125-272, gnl|mm7|chr8 (92664145-92664307) |
|
125-272, gnl|Mm7|chr8 (92664312-92664165) |
|
125-272, gnl|monDom2|scaffold_35 (23117455-23117623) |
|
125-272, gnl|oryCun1|scaffold_198557 (61946-61778) |
|
125-272, gnl|panTro1|chr18 (49187028-49187196) |
|
125-272, gnl|rheMac2|chr20 (54807884-54808052) |
|
125-272, gnl|rn3|chr19 (11379453-11379286) |
|
125-272, gnl|tetNig1|chrUn_random (139880619-139880475) |
|
125-272, gnl|xenTro1|scaffold_180 (215067-214903) |
| |
|
525-1021, gnl|bosTau2|chr18 (23966008-23965529) |
|
525-1021, gnl|Hg17|chr16 (55076288-55075798) |
|
525-1021, gnl|Mm7|chr8 (92657434-92656998) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
125-272, gnl|bosTau2|chr18 (23969946-23969799) |
|
125-272, gnl|canFam2|chr2 (62576633-62576465) |
|
125-272, gnl|danRer3|chr18 (18695103-18695258) |
|
125-272, gnl|echTel1|scaffold_311872 (41683-41840) |
|
125-272, gnl|galGal2|chr11 (2037524-2037360) |
|
125-272, gnl|hg17|chr16 (55089128-55089296) |
|
125-272, gnl|Hg17|chr16 (55089301-55089154) |
|
125-272, gnl|mm7|chr8 (92664145-92664307) |
|
125-272, gnl|Mm7|chr8 (92664312-92664165) |
|
125-272, gnl|monDom2|scaffold_35 (23117455-23117623) |
|
125-272, gnl|oryCun1|scaffold_198557 (61946-61778) |
|
125-272, gnl|panTro1|chr18 (49187028-49187196) |
|
125-272, gnl|rheMac2|chr20 (54807884-54808052) |
|
125-272, gnl|rn3|chr19 (11379453-11379286) |
|
125-272, gnl|tetNig1|chrUn_random (139880619-139880475) |
|
125-272, gnl|xenTro1|scaffold_180 (215067-214903) |
| |
|
525-1021, gnl|bosTau2|chr18 (23966008-23965529) |
|
525-1021, gnl|Hg17|chr16 (55076288-55075798) |
|
525-1021, gnl|Mm7|chr8 (92657434-92656998) |
|
gul (0.355177) |
|
ova (0.258264) |
|
ret (0.257467) |
|
tra (0.246184) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
mga (0.160205) |
|
liv (0.146284) |
|
thg (0.126791) |
|
gul (0.355177) |
|
ova (0.258264) |
|
ret (0.257467) |
|
tra (0.246184) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
mga (0.160205) |
|
liv (0.146284) |
|
thg (0.126791) |
