Non-Coding RNA Search

Ss1.1-Pig4-TMW8039A11.5

Sequence:


               
               TTTCACAGATGTCACCTTGATTTGGACAACTTTAAAGAAAAAATACCAAAATTTTCAAAT
TTTTGAGTTAAATATTAAAGCAGAATTTACTAAGATTGCATTCATTTGTGTGTTAGAAAA
GATTTGTGCAGCAGTATATGCCTGTGAAAATTACTCTTATGAGATATATAATATTCTTTT
AAAAATGCATGGCTATTTGTACATTATGTATAGATTGTCTTTAATTTATAAATTGCAGTC
TTCATTAATTGCATGAAAGTTTTCTGCAGCTTCTTGTGAATACCTTTATTATTTTGTTTA
ATAGGAGCTTAATTTTGTATATATTGAATACTGAGATATCAGTACAGACAGTAGAAGTGC
TTTGTGGGCTTGCTGCAGATGTTTGTAGGATTCTGTATCTACGAATAAAACAGATAGTTT
TGTACTTAGTTAATAGTCTTAGTTAAAACACAAGTTTATTTTCTAAAGTAACCAGAAGGA
GTAAAGTTAAAGATATGAGTGTTACATTACCATGTTGCTATTCATTCCCATAACCTTTCT
TTTTCTTTTGGTTTGGAAGAGGGTACTAGCCGCTAGAAAGCATGCCTCTTTACATCTCTT
TTTAATGGGGATTTAGCTTGAGTATTTTCATTATAACTTGGACCAGAAGAAATCTAGAGT
TTATCTGCTCTTTTCACCTATACCTAAAGCAAACTTGGGAGAAATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCACAGATGTCACCTTGATTTGGACAACTTTAAAGAAAAAATACCAAAATTTTCAAAT
TTTTGAGTTAAATATTAAAGCAGAATTTACTAAGATTGCATTCATTTGTGTGTTAGAAAA
GATTTGTGCAGCAGTATATGCCTGTGAAAATTACTCTTATGAGATATATAATATTCTTTT
AAAAATGCATGGCTATTTGTACATTATGTATAGATTGTCTTTAATTTATAAATTGCAGTC
TTCATTAATTGCATGAAAGTTTTCTGCAGCTTCTTGTGAATACCTTTATTATTTTGTTTA
ATAGGAGCTTAATTTTGTATATATTGAATACTGAGATATCAGTACAGACAGTAGAAGTGC
TTTGTGGGCTTGCTGCAGATGTTTGTAGGATTCTGTATCTACGAATAAAACAGATAGTTT
TGTACTTAGTTAATAGTCTTAGTTAAAACACAAGTTTATTTTCTAAAGTAACCAGAAGGA
GTAAAGTTAAAGATATGAGTGTTACATTACCATGTTGCTATTCATTCCCATAACCTTTCT
TTTTCTTTTGGTTTGGAAGAGGGTACTAGCCGCTAGAAAGCATGCCTCTTTACATCTCTT
TTTAATGGGGATTTAGCTTGAGTATTTTCATTATAACTTGGACCAGAAGAAATCTAGAGT
TTATCTGCTCTTTTCACCTATACCTAAAGCAAACTTGGGAGAAATTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               309-424, + strand, RNAz p=0.939448

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-424, + strand, RNAz p=0.939448

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AK074349, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK074349, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-705, gnl|bosTau2|chr2 (9213406-9214099)
               

               
               1-705, gnl|Hg17|chr2 (152157597-152158290)
               

               
               1-705, gnl|Mm7|chr2 (52128951-52129611)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-705, gnl|bosTau2|chr2 (9213406-9214099)
               

               
               1-705, gnl|Hg17|chr2 (152157597-152158290)
               

               
               1-705, gnl|Mm7|chr2 (52128951-52129611)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               fco (0.157208)

	1-705, gnl\|bosTau2\|chr2 (9213406-9214099)
	1-705, gnl\|Hg17\|chr2 (152157597-152158290)
	1-705, gnl\|Mm7\|chr2 (52128951-52129611)