Non-Coding RNA Search

Ss1.1-Pig4-TMW8039A13.3

Sequence:


               
               CTGCTAGCCTACACCACAGCCACAGCAACGCCAGATCCAAGCCACATCTGCAGCTTATAC
CACAGCTCATGGCAACGCCAGATCCTTAACCCACTGAGCAAGGCCAGGGATCGAACTCAC
AACCTCATGGTTCCTAGTCAGATTCGTTTCCTCTGTGCCACGCGGGAACTCCCCTTGCAC
TTTTTTGTACTGTTTTCTGACTCTTCCCATTTTACTAAAGCTCAAGTTGTGAAACTTGAC
AGATCAGAGGGAAATACTTGTAGTTGTATTTGACTTTCTAACACATTGGAAAGTTTCAAA
GCCGCTTCCATTTTCATCTATTAGAAGTAACCACTACTGAGGAGCCGGCATAAGATCCCA
TGCCCCCTTCAGTTTGACCTCATGGAAATTTTCCACCATGAAAGCCCTCTTTCCACTGCA
TGCTGCTGGGCCAACTCAGCTTCCTACAGCAGAGTCACAGGCCTGAACTTCAAATGAGAC
ATTTCATATGATTGCCTGTTTTCATATAAATTAACCTCTCAAGTAAGATTGCTTAATGCC
AAAATTGATAGACATTTATTACCTCCTATAGACCCCCCCCATTCTTTACCAAAATGTTAT
TTTTGTCAGTCCTGGGTCAATTTACAGAAATTAGAATCTTTGCTGCTAATATGAATACTA
ATTATAATTTTTACCTTAAAACCAAGAATAAAGCTTAAAGAAAATGAAATGTAATAATTT
TTTTATTCTTATCCCTAATAATATTTGGGAGGGAGAAATTCCTGCTTTCCCTCACCCCCC
AAGGGTTGTGGTTGATTTTTACTTTTCTAGGAAACAGAATATTGGACTACCCTAAAAAAT
GTTGCCAGAGTCCAGATGGAACTATGCATATTCAAAAAAAAAAATACAGTTTTCTCTTAC
CAGAAAAAAGTCAGAGTGTATTCTGTTAACATATTTTTAATGACTAAGCTTTAAGATTTA
TTTTGGATAAGATTAGAACTTTTAGCAGTTTATTCTAATATGTGTTTGTTAATATCTGTA
TTAATATCTATCAGAATTTGTGGAAAGAATGACAAAGGTATCTTGATCAGGAAACTTGAT
CCTATGTATGAATCATGTCCTGGCTAGTCACTGTAAAAGAGTAAACACCATTCTCAACAC
ATTAGTTTGCTAACCTTAAGGCTTAGAGACTTAGCACTTAAAAGGCATTTAATTATATTA
AGTTGGGGAAACCAAGGAGTAAATAAATCATAGTTTATCATTTGCCAGGGTCAACAAACA
GCACACTGTCTTGCTGCTTTCCTCCATTGGTGTTGGTAACTGTTAATTAATAAGCAAACC
AGGAGGCCTGGCATACTGATGTTGGTGACCATTAATTAATAAGCAAACCAGGAGGCCTGG
CATATTGATGTTGGTGACCATTAATTAATAAGCAAACCAGGAGGCCTCCCAGAGAGAGAT
CAGCATGTTGACTCATGGAAAATGTATATTGGACCATTTTAACCCACACTCACCCCTAAC
TTCTAGGTCAGTCATCTTCAGATATGATGCTGGGGAAATAGAACTTTAGATGGAAACTTC
TATGCACTTCTGGCCTGAGAGATGCTAGTTTCTTGTTCTCCTCATGTTGGCAATATGGTT
GGGCTAAGACCAATAGTGCTTCTCCCATGAAGCCATTAGAATCTGAGGAGAGAGTGTTAG
AGATGCCATTTCACCAGGATTTGTTTCTAAGGTTGTATTCATGCTCAGTTAAGAATAGGT
TAAAAATGTGGAGGAAAGATATACCTTTCTCTCCCTTAATATTTATGTTGATTTACAACA
CATAAAGATATGATGACAGACTATGATATGCTTTTAAGCAAGTCTTTATAATGCAATACT
TGTTCTTTGTCTGAAATTTAAATAAAGAATTTTTAAAACTTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTAGCCTACACCACAGCCACAGCAACGCCAGATCCAAGCCACATCTGCAGCTTATAC
CACAGCTCATGGCAACGCCAGATCCTTAACCCACTGAGCAAGGCCAGGGATCGAACTCAC
AACCTCATGGTTCCTAGTCAGATTCGTTTCCTCTGTGCCACGCGGGAACTCCCCTTGCAC
TTTTTTGTACTGTTTTCTGACTCTTCCCATTTTACTAAAGCTCAAGTTGTGAAACTTGAC
AGATCAGAGGGAAATACTTGTAGTTGTATTTGACTTTCTAACACATTGGAAAGTTTCAAA
GCCGCTTCCATTTTCATCTATTAGAAGTAACCACTACTGAGGAGCCGGCATAAGATCCCA
TGCCCCCTTCAGTTTGACCTCATGGAAATTTTCCACCATGAAAGCCCTCTTTCCACTGCA
TGCTGCTGGGCCAACTCAGCTTCCTACAGCAGAGTCACAGGCCTGAACTTCAAATGAGAC
ATTTCATATGATTGCCTGTTTTCATATAAATTAACCTCTCAAGTAAGATTGCTTAATGCC
AAAATTGATAGACATTTATTACCTCCTATAGACCCCCCCCATTCTTTACCAAAATGTTAT
TTTTGTCAGTCCTGGGTCAATTTACAGAAATTAGAATCTTTGCTGCTAATATGAATACTA
ATTATAATTTTTACCTTAAAACCAAGAATAAAGCTTAAAGAAAATGAAATGTAATAATTT
TTTTATTCTTATCCCTAATAATATTTGGGAGGGAGAAATTCCTGCTTTCCCTCACCCCCC
AAGGGTTGTGGTTGATTTTTACTTTTCTAGGAAACAGAATATTGGACTACCCTAAAAAAT
GTTGCCAGAGTCCAGATGGAACTATGCATATTCAAAAAAAAAAATACAGTTTTCTCTTAC
CAGAAAAAAGTCAGAGTGTATTCTGTTAACATATTTTTAATGACTAAGCTTTAAGATTTA
TTTTGGATAAGATTAGAACTTTTAGCAGTTTATTCTAATATGTGTTTGTTAATATCTGTA
TTAATATCTATCAGAATTTGTGGAAAGAATGACAAAGGTATCTTGATCAGGAAACTTGAT
CCTATGTATGAATCATGTCCTGGCTAGTCACTGTAAAAGAGTAAACACCATTCTCAACAC
ATTAGTTTGCTAACCTTAAGGCTTAGAGACTTAGCACTTAAAAGGCATTTAATTATATTA
AGTTGGGGAAACCAAGGAGTAAATAAATCATAGTTTATCATTTGCCAGGGTCAACAAACA
GCACACTGTCTTGCTGCTTTCCTCCATTGGTGTTGGTAACTGTTAATTAATAAGCAAACC
AGGAGGCCTGGCATACTGATGTTGGTGACCATTAATTAATAAGCAAACCAGGAGGCCTGG
CATATTGATGTTGGTGACCATTAATTAATAAGCAAACCAGGAGGCCTCCCAGAGAGAGAT
CAGCATGTTGACTCATGGAAAATGTATATTGGACCATTTTAACCCACACTCACCCCTAAC
TTCTAGGTCAGTCATCTTCAGATATGATGCTGGGGAAATAGAACTTTAGATGGAAACTTC
TATGCACTTCTGGCCTGAGAGATGCTAGTTTCTTGTTCTCCTCATGTTGGCAATATGGTT
GGGCTAAGACCAATAGTGCTTCTCCCATGAAGCCATTAGAATCTGAGGAGAGAGTGTTAG
AGATGCCATTTCACCAGGATTTGTTTCTAAGGTTGTATTCATGCTCAGTTAAGAATAGGT
TAAAAATGTGGAGGAAAGATATACCTTTCTCTCCCTTAATATTTATGTTGATTTACAACA
CATAAAGATATGATGACAGACTATGATATGCTTTTAAGCAAGTCTTTATAATGCAATACT
TGTTCTTTGTCTGAAATTTAAATAAAGAATTTTTAAAACTTGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1214-1332, - strand, RNAz p=0.861529

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1214-1332, - strand, RNAz p=0.861529

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               183-1332, gnl|bosTau2|chr3 (18745820-18744676)
               

               
               183-1332, gnl|Hg17|chr1 (158663905-158665026)
               

               
               183-1332, gnl|Mm7|chr1 (170682849-170681728)
               


               
               1433-1902, gnl|bosTau2|chr3 (18744652-18744175)
               

               
               1433-1902, gnl|Hg17|chr1 (158665049-158665518)
               

               
               1433-1902, gnl|Mm7|chr1 (170681704-170681152)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-1332, gnl|bosTau2|chr3 (18745820-18744676)
               

               
               183-1332, gnl|Hg17|chr1 (158663905-158665026)
               

               
               183-1332, gnl|Mm7|chr1 (170682849-170681728)
               


               
               1433-1902, gnl|bosTau2|chr3 (18744652-18744175)
               

               
               1433-1902, gnl|Hg17|chr1 (158665049-158665518)
               

               
               1433-1902, gnl|Mm7|chr1 (170681704-170681152)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	183-1332, gnl\|bosTau2\|chr3 (18745820-18744676)
	183-1332, gnl\|Hg17\|chr1 (158663905-158665026)
	183-1332, gnl\|Mm7\|chr1 (170682849-170681728)

	1433-1902, gnl\|bosTau2\|chr3 (18744652-18744175)
	1433-1902, gnl\|Hg17\|chr1 (158665049-158665518)
	1433-1902, gnl\|Mm7\|chr1 (170681704-170681152)

	pro (0.512033)
	liv (0.292569)
	spl (0.286369)
	csk (0.281492)
	bla (0.248694)
	mgp (0.230681)
	spc (0.226732)
	nms (0.213858)
	tes (0.207814)
	fcc (0.197785)
	nep (0.183925)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	isp (0.150376)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	cbl (0.114797)
	jej (0.0989218)