Ss1.1-Pig4-TMW8039A16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGACGAGGGGAGGGCAGACCCAGCCTTGGAGACCAGCACCATGTCCGTGCAAGAAAA CGTCCATATGCTCTCTGAAGAAAAACAAAGGATAATGCTGCTGGAACGAACACTACAGTT GAAAATGAGAAAAGAAAACATAATCAATGATCTCAGCGATAAGCTGAAAAGCACGATGCA GCAGCAAGAGCGGGACAAAGATCTGATCGAGTCGCTGTCGGCGGACCGGGCGCGGTTGCT GGAGGAGAAGAAGCGGCTGGAGGAGGAGGTTGGCCGGCTACGGGGCGCTGGCCCGGTGCC CTCCCCGAGCGCGGTAGCCCCGGAGCTTTATGGAGCCTGCGCCGCCGCGGAGCCCCCGGG AGAGGCGGAGAGGCCGCTGCTGCCTGAGGCCCCCGACGAGGGGAGGGCAGACCCAGCCTT GGAGACCAGCACCATGTCCGTGCAAGAAAACGTCCATATGCTCTCTGAAGAAAAACAAAG GATAATGCTGCTGGAACGAACACTACAGTTGAAAGAGTTGAAAGAAGAAGAAAACAAGCG GTTGAATCAGAGACTGATGTCCCAGAGCCTGTCCTCCGTCTCCCCGCGGCACTCTGAGAA GATCGCCATCAGAGATTTTCAGGTGGGCGACCTGGTCCTTATCATCCTGGACGAGCGCCA CGACAACTACGTGCTCTTTACCGTGAGCCCCACCTTGTACTTCCTGCATTCGGAGTCTCT GCCTGCCCTGGACCTCAAACCAGCTTCAGGTGCGTCTAGAAGACCGTGGGTCCTTGGAAA AGTGATGGAGAAGGAGTACTGTCAGGCCAAAAAGGCACAAAACAGATTTAAAGTTCCTTT GGGGACAAAGTTTTACAGAGTGAAAGCTGTGTCGTGGAATAAGAAAGTATAATTTATGGA AGAAATTGAGACAGTCTGTGACATTTTTCTCTGATTTGTCCAACAGTGCTCATTCATCAC TCCAAAAACAAGGCCATCTTTTTATATAAAAGTTATCATGACAATAATACTTCATTGGTG TATATCATTTACTTTTTACCTGGCTACATTTTAGGAACAATAAATTCATCAAAACCCTTG GCCGAATTAAAATGGTTTTGTTCTTGTTTTTCTACCCAAGTAACTCTAGAAATGCGGACC AAACTAGTTCATTTTCTCAAAGGGCACACCCTGTGCATCGTGGCTTATGATGAGCCATGT TAATTGCCTGTTACATAGACAGTAGCTTGAACTTAGATATTCAGTGTTAGTTCTTATTAC CAGCATTTGTCCTTTTGTGAAATCAATATCGGAAAACTTGCACTCTTTAACACATTCTTT ATAAAATGTATAAATTCTTCAAAACTGTCTAAAGAGGAGTGTTATTGCATGCAGATAATC ATAATTTTGGGTTTGCCTCTGTAGATTACTAAAGCAAATTGTTTCATTTATTTTTTTAAA TGCCCTTTGATGTTTCAAAACAAAAAGGAACTCTAATTTGATTGACTGACTTTAAGATCA GCCATAATCAATCTTCAAAAGCACTTTGAACAGATGGTCCCTGGGCTCTGCAGGGGGGAC TGTGCTGGTGAGGGTTTCCAGGGCAGCTCACGAGCCTTCCCAGTGCTTCGTGACTGTTTA GAATGGTTATAGTGATGGGGTCGTAGGTCATGATTCAGTCTCAGAAAAACATATTCACTG TACATTAACCATTAGAGGTCATCTGAATAACAAACTGTTGTATTGTAAAAGACATGTAGA ATTTTAAAACAATAAAGATTTGAACCTGTAAATGTGTGTGCCTTTTAAAGAAGACATTTT TAATATATTTGATTGTTGGGAAGTGTGAAAAACTTGTTCTGTATCATATCAGAAGAGAAA CATGTTTATTACAAAATGTTCTTTAACTATATACTGTATAACAGGGTAAAACAGTGTTAT GTAGACTAGAGTTGTGTAAATGCCATCTTTAGGTAAATTGCTATGGAGCAAAGGTATTTA AATGGGGCAGTTGAGTTGGATGAGACTTGTTTCAGGTTTGTTGCTAGAGAACAATAATAA AATGATTTTTTTTCCAGAAAATATTTAATTTCTTCATAAAAATAAGTTAAATATTTTTTT AAATGTGTATATCTAATAGTACAGAAAATGGAATAAGCACCATAGTGTATAGAAAACTGA ATTTGACAACATATTAATGAATAAATGAACAAATGATTTCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGACGAGGGGAGGGCAGACCCAGCCTTGGAGACCAGCACCATGTCCGTGCAAGAAAA CGTCCATATGCTCTCTGAAGAAAAACAAAGGATAATGCTGCTGGAACGAACACTACAGTT GAAAATGAGAAAAGAAAACATAATCAATGATCTCAGCGATAAGCTGAAAAGCACGATGCA GCAGCAAGAGCGGGACAAAGATCTGATCGAGTCGCTGTCGGCGGACCGGGCGCGGTTGCT GGAGGAGAAGAAGCGGCTGGAGGAGGAGGTTGGCCGGCTACGGGGCGCTGGCCCGGTGCC CTCCCCGAGCGCGGTAGCCCCGGAGCTTTATGGAGCCTGCGCCGCCGCGGAGCCCCCGGG AGAGGCGGAGAGGCCGCTGCTGCCTGAGGCCCCCGACGAGGGGAGGGCAGACCCAGCCTT GGAGACCAGCACCATGTCCGTGCAAGAAAACGTCCATATGCTCTCTGAAGAAAAACAAAG GATAATGCTGCTGGAACGAACACTACAGTTGAAAGAGTTGAAAGAAGAAGAAAACAAGCG GTTGAATCAGAGACTGATGTCCCAGAGCCTGTCCTCCGTCTCCCCGCGGCACTCTGAGAA GATCGCCATCAGAGATTTTCAGGTGGGCGACCTGGTCCTTATCATCCTGGACGAGCGCCA CGACAACTACGTGCTCTTTACCGTGAGCCCCACCTTGTACTTCCTGCATTCGGAGTCTCT GCCTGCCCTGGACCTCAAACCAGCTTCAGGTGCGTCTAGAAGACCGTGGGTCCTTGGAAA AGTGATGGAGAAGGAGTACTGTCAGGCCAAAAAGGCACAAAACAGATTTAAAGTTCCTTT GGGGACAAAGTTTTACAGAGTGAAAGCTGTGTCGTGGAATAAGAAAGTATAATTTATGGA AGAAATTGAGACAGTCTGTGACATTTTTCTCTGATTTGTCCAACAGTGCTCATTCATCAC TCCAAAAACAAGGCCATCTTTTTATATAAAAGTTATCATGACAATAATACTTCATTGGTG TATATCATTTACTTTTTACCTGGCTACATTTTAGGAACAATAAATTCATCAAAACCCTTG GCCGAATTAAAATGGTTTTGTTCTTGTTTTTCTACCCAAGTAACTCTAGAAATGCGGACC AAACTAGTTCATTTTCTCAAAGGGCACACCCTGTGCATCGTGGCTTATGATGAGCCATGT TAATTGCCTGTTACATAGACAGTAGCTTGAACTTAGATATTCAGTGTTAGTTCTTATTAC CAGCATTTGTCCTTTTGTGAAATCAATATCGGAAAACTTGCACTCTTTAACACATTCTTT ATAAAATGTATAAATTCTTCAAAACTGTCTAAAGAGGAGTGTTATTGCATGCAGATAATC ATAATTTTGGGTTTGCCTCTGTAGATTACTAAAGCAAATTGTTTCATTTATTTTTTTAAA TGCCCTTTGATGTTTCAAAACAAAAAGGAACTCTAATTTGATTGACTGACTTTAAGATCA GCCATAATCAATCTTCAAAAGCACTTTGAACAGATGGTCCCTGGGCTCTGCAGGGGGGAC TGTGCTGGTGAGGGTTTCCAGGGCAGCTCACGAGCCTTCCCAGTGCTTCGTGACTGTTTA GAATGGTTATAGTGATGGGGTCGTAGGTCATGATTCAGTCTCAGAAAAACATATTCACTG TACATTAACCATTAGAGGTCATCTGAATAACAAACTGTTGTATTGTAAAAGACATGTAGA ATTTTAAAACAATAAAGATTTGAACCTGTAAATGTGTGTGCCTTTTAAAGAAGACATTTT TAATATATTTGATTGTTGGGAAGTGTGAAAAACTTGTTCTGTATCATATCAGAAGAGAAA CATGTTTATTACAAAATGTTCTTTAACTATATACTGTATAACAGGGTAAAACAGTGTTAT GTAGACTAGAGTTGTGTAAATGCCATCTTTAGGTAAATTGCTATGGAGCAAAGGTATTTA AATGGGGCAGTTGAGTTGGATGAGACTTGTTTCAGGTTTGTTGCTAGAGAACAATAATAA AATGATTTTTTTTCCAGAAAATATTTAATTTCTTCATAAAAATAAGTTAAATATTTTTTT AAATGTGTATATCTAATAGTACAGAAAATGGAATAAGCACCATAGTGTATAGAAAACTGA ATTTGACAACATATTAATGAATAAATGAACAAATGATTTCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 199-444, gnl|bosTau2|chr14 (10782564-10782794) | |
| 199-444, gnl|Hg17|chr8 (53717706-53717464) | |
| 199-444, gnl|Mm7|chr1 (6263988-6264230) | |
| 616-737, gnl|bosTau2|chr14 (10787137-10787258) | |
| 616-737, gnl|canFam2|chr29 (7455964-7456147) | |
| 616-737, gnl|danRer3|chrNA (12023389-12023245) | |
| 616-737, gnl|dasNov1|scaffold_62102 (41881-42065) | |
| 616-737, gnl|echTel1|scaffold_261779 (2792-2597) | |
| 616-737, gnl|fr1|chrUn (61465405-61465541) | |
| 616-737, gnl|galGal2|chr2 (109107613-109107801) | |
| 616-737, gnl|hg17|chr8 (53703133-53703316) | |
| 616-737, gnl|Hg17|chr8 (53703281-53703160) | |
| 616-737, gnl|loxAfr1|scaffold_5166 (56369-56550) | |
| 616-737, gnl|mm7|chr1 (6271807-6271629) | |
| 616-737, gnl|Mm7|chr1 (6271657-6271778) | |
| 616-737, gnl|monDom2|scaffold_4 (112084980-112084797) | |
| 616-737, gnl|oryCun1|scaffold_173092 (34965-35157) | |
| 616-737, gnl|panTro1|chr7 (55333745-55333928) | |
| 616-737, gnl|rheMac2|chr8 (55196801-55196984) | |
| 616-737, gnl|rn3|chr5 (13306249-13306427) | |
| 616-737, gnl|tetNig1|chr15_random (764874-765020) | |
| 616-737, gnl|xenTro1|scaffold_8 (1397981-1398156) | |
| 743-1805, gnl|bosTau2|chr13 (46506432-46507493) | |
| 743-1805, gnl|Hg17|chr8 (53699901-53698003) | |
| 743-1805, gnl|Mm7|chr1 (6273666-6276131) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-444, gnl|bosTau2|chr14 (10782564-10782794) | |
| 199-444, gnl|Hg17|chr8 (53717706-53717464) | |
| 199-444, gnl|Mm7|chr1 (6263988-6264230) | |
| 616-737, gnl|bosTau2|chr14 (10787137-10787258) | |
| 616-737, gnl|canFam2|chr29 (7455964-7456147) | |
| 616-737, gnl|danRer3|chrNA (12023389-12023245) | |
| 616-737, gnl|dasNov1|scaffold_62102 (41881-42065) | |
| 616-737, gnl|echTel1|scaffold_261779 (2792-2597) | |
| 616-737, gnl|fr1|chrUn (61465405-61465541) | |
| 616-737, gnl|galGal2|chr2 (109107613-109107801) | |
| 616-737, gnl|hg17|chr8 (53703133-53703316) | |
| 616-737, gnl|Hg17|chr8 (53703281-53703160) | |
| 616-737, gnl|loxAfr1|scaffold_5166 (56369-56550) | |
| 616-737, gnl|mm7|chr1 (6271807-6271629) | |
| 616-737, gnl|Mm7|chr1 (6271657-6271778) | |
| 616-737, gnl|monDom2|scaffold_4 (112084980-112084797) | |
| 616-737, gnl|oryCun1|scaffold_173092 (34965-35157) | |
| 616-737, gnl|panTro1|chr7 (55333745-55333928) | |
| 616-737, gnl|rheMac2|chr8 (55196801-55196984) | |
| 616-737, gnl|rn3|chr5 (13306249-13306427) | |
| 616-737, gnl|tetNig1|chr15_random (764874-765020) | |
| 616-737, gnl|xenTro1|scaffold_8 (1397981-1398156) | |
| 743-1805, gnl|bosTau2|chr13 (46506432-46507493) | |
| 743-1805, gnl|Hg17|chr8 (53699901-53698003) | |
| 743-1805, gnl|Mm7|chr1 (6273666-6276131) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| vin (0.665115) | |
| bfe (0.599431) | |
| thg (0.507164) | |
| fco (0.471624) | |
| ste (0.405625) | |
| sag (0.36543) | |
| cut (0.339847) | |
| cki (0.330469) | |
| mga (0.32041) | |
| liv (0.292569) | |
| spl (0.286369) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| bfe (0.599431) | |
| thg (0.507164) | |
| fco (0.471624) | |
| ste (0.405625) | |
| sag (0.36543) | |
| cut (0.339847) | |
| cki (0.330469) | |
| mga (0.32041) | |
| liv (0.292569) | |
| spl (0.286369) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) | |
| med (0.116252) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |