Ss1.1-Pig4-TMW8039A19.3
|
CTCCCGCCGCAGCCGCAGTGGCCAGCGCCGCAGCGAGGAGCCATGGGCAACATCTCCTCC
AACATCTCGGCTTTCCAGTCCCTGCACATCGTCATGCTGGGCTTGGACTCGGCCGGCAAG
ACCACTGTGCTCTACCGGCTCAAGTTCAACGAGTTCGTGAACACGGTGCCCACCATCGGC
TTCAACACGGAGAAGATCAAGCTGAGCAACGGCACGGCCAAGGGCATCAGCTGCCACTTC
TGGGACGTGGGCGGCCAGGAGAAGCTGCGGCCGCTGTGGAAGTCGTACAGCCGCTGCACG
GACGGCATCATCTACGTGGTGGACTCGGTGGACGTGGATCGGCTGGAGGAAGCCAAGACG
GAGCTGCACAAGGTGACCAAGTTCGCCGAGAACCAGGGCACGCCGCTGCTGGTCATCGCC
AACAAGCAGGACCTGCCCAAGTCGCTGCCCGTGGCCGAGATCGAGAAGCAGCTGGCGCTG
CACGAGCTCATCCCGGCCACCACCTACCACGTCCAGCCGGCGTGCGCCATCATTGGCGAG
GGCCTCACCGAGGGCATGGACAAGCTCTATGAGATGATCCTGAAACGCAGGAAGTCCCTC
AAGCAGAAGAAGAAGCGGTAATGCGCCCGGCAGCGTTCCCGGAGCGAGGGGGAAAGCGAG
CGAGTGAGTCGGGAATGAATGAATGAAAGGCTGGATGGTTGAGCGAGAACCCGCGCGCCC
GCGAACAAAGACAGCGAACCAAAGCGACGCTTCCAATTTTTAAAGCGGAATCTGTGCACC
CAAATGCAGGACTAGTGACTTGGCCCGGGTATGTAGGCAGACTTGCCAACCTGCGCTCGA
CCTGCCCCCCACCCCCGGCTCGGGGGACCTTTTGTCTGAACGCCAGAGCTTCTGCTGGGG
AGGGGGGCCCCTCTGGGGAGTGGACGTGCAGGTTTGGCCATCCGCCCTCCGGGCCCAGGT
GGAAGGCTCAGATGGCAGAGACAAAAAGCGATTTCTTCCCACTCCAGCAGGGCCAGAAGT
TCGGGCTACCCCGCCCTCACTGGGGATCGCACCTGTGAGTTACCAGAGGTATGCCGCTCC
CATAACCCCGGGAATCCCATTTGGGGGCCTGGTGGCAGTGGGAGGTGCTGGGGGGACCGC
CTGTCCTTGCAGTCATGGGCTGTGAAAGCTGGAGAATTTTCTGTCACAGGGGCAGGCCCC
TGTGAAAATCCATTTGTCCTGCTCTGGGCCCCCAGTGAAGTGGTGGCTTGGGCCATCAGA
GGACTGCCTGGAACAGGAGGGCAGCCGGAAGGCCCCCGGCGCTGCGCTGGCCTCGGCTGG
GGAATGGCCTCGAAGAATGCCCCTTTCCTGGTGCTTTGTGGTAGCTACGGAAGACCAGTT
TTGTTGAGAACTGCTTTTCAGCCTGGAATCAGACATCTATCTTTCAGATGGTTTGGATCC
TGTCCATGTTGTGTAGGTCATTATCACACAAAGAGACCAATAAAAATTTTAAAAACCAAA
AACAAAAAACAAAAAACCTGTTGGAGGTGGTGGCAAATGATGCATTTACCGTTTGCAGAA
TAGTTAAAGGTGTTAGTTTGAAGGGTAAGGCTCTTAATGTCTCTGCTGGATGGGGGGTGT
GTGTCCTAGAGGCAGGGACCTCTCTCTGTCCTGGGTAATCGGCATACATTTCTAGACCCC
TCTGTGGGGAATCTGAAATTCTCTTAGCCTCCTGATGGGTTTGGGTGAGCACATCAGCTG
CAGATGTGTGCCGAATTACAAGCTGGTTTTTGCAAGGGATGGCTCTTGTAATCCTAACTG
CTTGATGATGGGTTTTGGTTTTCAGGCTCCCCCCCCCCCAAATCTGCTATGAATGAACAT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCCCGCCGCAGCCGCAGTGGCCAGCGCCGCAGCGAGGAGCCATGGGCAACATCTCCTCC
AACATCTCGGCTTTCCAGTCCCTGCACATCGTCATGCTGGGCTTGGACTCGGCCGGCAAG
ACCACTGTGCTCTACCGGCTCAAGTTCAACGAGTTCGTGAACACGGTGCCCACCATCGGC
TTCAACACGGAGAAGATCAAGCTGAGCAACGGCACGGCCAAGGGCATCAGCTGCCACTTC
TGGGACGTGGGCGGCCAGGAGAAGCTGCGGCCGCTGTGGAAGTCGTACAGCCGCTGCACG
GACGGCATCATCTACGTGGTGGACTCGGTGGACGTGGATCGGCTGGAGGAAGCCAAGACG
GAGCTGCACAAGGTGACCAAGTTCGCCGAGAACCAGGGCACGCCGCTGCTGGTCATCGCC
AACAAGCAGGACCTGCCCAAGTCGCTGCCCGTGGCCGAGATCGAGAAGCAGCTGGCGCTG
CACGAGCTCATCCCGGCCACCACCTACCACGTCCAGCCGGCGTGCGCCATCATTGGCGAG
GGCCTCACCGAGGGCATGGACAAGCTCTATGAGATGATCCTGAAACGCAGGAAGTCCCTC
AAGCAGAAGAAGAAGCGGTAATGCGCCCGGCAGCGTTCCCGGAGCGAGGGGGAAAGCGAG
CGAGTGAGTCGGGAATGAATGAATGAAAGGCTGGATGGTTGAGCGAGAACCCGCGCGCCC
GCGAACAAAGACAGCGAACCAAAGCGACGCTTCCAATTTTTAAAGCGGAATCTGTGCACC
CAAATGCAGGACTAGTGACTTGGCCCGGGTATGTAGGCAGACTTGCCAACCTGCGCTCGA
CCTGCCCCCCACCCCCGGCTCGGGGGACCTTTTGTCTGAACGCCAGAGCTTCTGCTGGGG
AGGGGGGCCCCTCTGGGGAGTGGACGTGCAGGTTTGGCCATCCGCCCTCCGGGCCCAGGT
GGAAGGCTCAGATGGCAGAGACAAAAAGCGATTTCTTCCCACTCCAGCAGGGCCAGAAGT
TCGGGCTACCCCGCCCTCACTGGGGATCGCACCTGTGAGTTACCAGAGGTATGCCGCTCC
CATAACCCCGGGAATCCCATTTGGGGGCCTGGTGGCAGTGGGAGGTGCTGGGGGGACCGC
CTGTCCTTGCAGTCATGGGCTGTGAAAGCTGGAGAATTTTCTGTCACAGGGGCAGGCCCC
TGTGAAAATCCATTTGTCCTGCTCTGGGCCCCCAGTGAAGTGGTGGCTTGGGCCATCAGA
GGACTGCCTGGAACAGGAGGGCAGCCGGAAGGCCCCCGGCGCTGCGCTGGCCTCGGCTGG
GGAATGGCCTCGAAGAATGCCCCTTTCCTGGTGCTTTGTGGTAGCTACGGAAGACCAGTT
TTGTTGAGAACTGCTTTTCAGCCTGGAATCAGACATCTATCTTTCAGATGGTTTGGATCC
TGTCCATGTTGTGTAGGTCATTATCACACAAAGAGACCAATAAAAATTTTAAAAACCAAA
AACAAAAAACAAAAAACCTGTTGGAGGTGGTGGCAAATGATGCATTTACCGTTTGCAGAA
TAGTTAAAGGTGTTAGTTTGAAGGGTAAGGCTCTTAATGTCTCTGCTGGATGGGGGGTGT
GTGTCCTAGAGGCAGGGACCTCTCTCTGTCCTGGGTAATCGGCATACATTTCTAGACCCC
TCTGTGGGGAATCTGAAATTCTCTTAGCCTCCTGATGGGTTTGGGTGAGCACATCAGCTG
CAGATGTGTGCCGAATTACAAGCTGGTTTTTGCAAGGGATGGCTCTTGTAATCCTAACTG
CTTGATGATGGGTTTTGGTTTTCAGGCTCCCCCCCCCCCAAATCTGCTATGAATGAACAT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
73-617, gnl|bosTau2|chr19 (42448282-42448826) |
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73-617, gnl|canFam2|chr9 (23151599-23151236) |
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73-617, gnl|danRer3|chr12 (26650294-26650654) |
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73-617, gnl|dasNov1|scaffold_108321 (5123-5483) |
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73-617, gnl|echTel1|scaffold_100838 (6940-7313) |
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73-617, gnl|fr1|chrUn (244909768-244909402) |
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73-617, gnl|galGal2|chr7 (5624689-5624331) |
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73-617, gnl|hg17|chr17 (38832657-38833020) |
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73-617, gnl|Hg17|chr17 (38832681-38833225) |
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73-617, gnl|loxAfr1|scaffold_149603 (4288-4648) |
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73-617, gnl|mm7|chr11 (101775719-101776082) |
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73-617, gnl|Mm7|chr11 (101775743-101776287) |
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73-617, gnl|monDom2|scaffold_18 (53781382-53781745) |
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73-617, gnl|oryCun1|scaffold_146528 (9752-9392) |
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73-617, gnl|panTro1|chr19 (41916464-41916827) |
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73-617, gnl|rheMac2|chr16 (53413281-53413644) |
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73-617, gnl|rn3|chr10 (90715824-90716187) |
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73-617, gnl|tetNig1|chr2 (1114177-1114540) |
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73-617, gnl|xenTro1|scaffold_49 (1504611-1504248) |
| |
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1386-1825, gnl|bosTau2|chr3 (78748146-78748556) |
|
1386-1825, gnl|Hg17|chr2 (235185852-235185462) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
73-617, gnl|bosTau2|chr19 (42448282-42448826) |
|
73-617, gnl|canFam2|chr9 (23151599-23151236) |
|
73-617, gnl|danRer3|chr12 (26650294-26650654) |
|
73-617, gnl|dasNov1|scaffold_108321 (5123-5483) |
|
73-617, gnl|echTel1|scaffold_100838 (6940-7313) |
|
73-617, gnl|fr1|chrUn (244909768-244909402) |
|
73-617, gnl|galGal2|chr7 (5624689-5624331) |
|
73-617, gnl|hg17|chr17 (38832657-38833020) |
|
73-617, gnl|Hg17|chr17 (38832681-38833225) |
|
73-617, gnl|loxAfr1|scaffold_149603 (4288-4648) |
|
73-617, gnl|mm7|chr11 (101775719-101776082) |
|
73-617, gnl|Mm7|chr11 (101775743-101776287) |
|
73-617, gnl|monDom2|scaffold_18 (53781382-53781745) |
|
73-617, gnl|oryCun1|scaffold_146528 (9752-9392) |
|
73-617, gnl|panTro1|chr19 (41916464-41916827) |
|
73-617, gnl|rheMac2|chr16 (53413281-53413644) |
|
73-617, gnl|rn3|chr10 (90715824-90716187) |
|
73-617, gnl|tetNig1|chr2 (1114177-1114540) |
|
73-617, gnl|xenTro1|scaffold_49 (1504611-1504248) |
| |
|
1386-1825, gnl|bosTau2|chr3 (78748146-78748556) |
|
1386-1825, gnl|Hg17|chr2 (235185852-235185462) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
cty (0.20816) |
|
sag (0.182715) |
|
nco (0.161734) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eep (0.122564) |
|
cly (0.120642) |
|
jej (0.0989218) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
cty (0.20816) |
|
sag (0.182715) |
|
nco (0.161734) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eep (0.122564) |
|
cly (0.120642) |
|
jej (0.0989218) |
