Ss1.1-Pig4-TMW8039A22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGCAGTGAGGAGGCGCCAGACTACGGGCGAGGCGTGGTGATTCTGGACAACTGGCCA GGGTATGACTTGAATTTGTTCACATACCCACAGCACTATTATGGAGACTTGGAATACGTC CTCATCCCTCATGGCATCATTGTAGACAGAATTGAACGGCTGGCTAAGGATATTATGAAA GACATAGGCTACTGTGACATTATGGTCCTGTGTGTGCTGAAAGGAGGCTACAAGTTCTGT GCCGACCTCGTAGAACACCTTAAGAGCATCAGTCGAAATTCTGATAGATTTGTCTCTATG AAGGTGGATTTCATCAGACTAAAAAGCTACAGGGTTCCTGGGCCAGGGGACGAGATGCAG CCACAGCAGAGACCCGAGCCACTGCAGTGACAACACCGGATACTTAACCCACTAAGCCAC AGGAGAACTCCTCACATTGTCTTAAAAGCGTTGCTCAGTAGCATAGAGAAATACAAGCCC AACATGATTAAGGTCAGCAGCTGTCAACACTGAAACACACCTAGAAGTTACAACTTGAAG GCTCATATGATGGTTAACATTTTTTAGCAACAAAATACTTTTAAATTAAGGTATGCAGGT TTTGTAGACATAATGCTATTGCACATTTCATAAACTACAGTATAAGGTAAACATAACTTT TATATGCACTGGGACACCAAAACGTTTGTGTGACTTGCGGGAGAGTAAATCTGGTCTTTG TTATTCTGTCTTGGCAAGAAACAGAAGTCACAGAGATTTATCAGATGTATAATGAAAATT TTAAAACCACAACAATAATGAAAATAATTCCCTTACATTTTTTTAAATTAAAAAGCAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGCAGTGAGGAGGCGCCAGACTACGGGCGAGGCGTGGTGATTCTGGACAACTGGCCA GGGTATGACTTGAATTTGTTCACATACCCACAGCACTATTATGGAGACTTGGAATACGTC CTCATCCCTCATGGCATCATTGTAGACAGAATTGAACGGCTGGCTAAGGATATTATGAAA GACATAGGCTACTGTGACATTATGGTCCTGTGTGTGCTGAAAGGAGGCTACAAGTTCTGT GCCGACCTCGTAGAACACCTTAAGAGCATCAGTCGAAATTCTGATAGATTTGTCTCTATG AAGGTGGATTTCATCAGACTAAAAAGCTACAGGGTTCCTGGGCCAGGGGACGAGATGCAG CCACAGCAGAGACCCGAGCCACTGCAGTGACAACACCGGATACTTAACCCACTAAGCCAC AGGAGAACTCCTCACATTGTCTTAAAAGCGTTGCTCAGTAGCATAGAGAAATACAAGCCC AACATGATTAAGGTCAGCAGCTGTCAACACTGAAACACACCTAGAAGTTACAACTTGAAG GCTCATATGATGGTTAACATTTTTTAGCAACAAAATACTTTTAAATTAAGGTATGCAGGT TTTGTAGACATAATGCTATTGCACATTTCATAAACTACAGTATAAGGTAAACATAACTTT TATATGCACTGGGACACCAAAACGTTTGTGTGACTTGCGGGAGAGTAAATCTGGTCTTTG TTATTCTGTCTTGGCAAGAAACAGAAGTCACAGAGATTTATCAGATGTATAATGAAAATT TTAAAACCACAACAATAATGAAAATAATTCCCTTACATTTTTTTAAATTAAAAAGCAAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 147-335, gnl|bosTau2|chr13 (14116346-14116158) | |
| 147-335, gnl|canFam2|chr2 (11456058-11455863) | |
| 147-335, gnl|danRer3|chrUn (102088148-102087955) | |
| 147-335, gnl|dasNov1|scaffold_7976 (2410-2214) | |
| 147-335, gnl|echTel1|scaffold_255791 (708-512) | |
| 147-335, gnl|fr1|chrUn (108423766-108423573) | |
| 147-335, gnl|galGal2|chr2 (16084241-16084045) | |
| 147-335, gnl|hg17|chr10 (25266116-25266312) | |
| 147-335, gnl|Hg17|chr10 (25266305-25266117) | |
| 147-335, gnl|loxAfr1|scaffold_34840 (10220-10020) | |
| 147-335, gnl|mm7|chr2 (21184969-21185165) | |
| 147-335, gnl|Mm7|chr2 (21185158-21184970) | |
| 147-335, gnl|monDom2|scaffold_7 (43633040-43632844) | |
| 147-335, gnl|oryCun1|scaffold_199169 (11454-11257) | |
| 147-335, gnl|panTro1|chr8 (25538047-25538243) | |
| 147-335, gnl|rheMac2|chr9 (25122434-25122630) | |
| 147-335, gnl|rn3|chr17 (95135372-95135568) | |
| 147-335, gnl|tetNig1|chrUn_random (35256649-35256842) | |
| 147-335, gnl|xenTro1|scaffold_42 (1598496-1598300) | |
| 493-724, gnl|bosTau2|chr13 (42370431-42370655) | |
| 527-723, gnl|bosTau2|chr13 (21292450-21292255) | |
| 528-698, gnl|bosTau2|chr10 (13787737-13787559) | |
| 536-682, gnl|bosTau2|chr10 (17963095-17963240) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-335, gnl|bosTau2|chr13 (14116346-14116158) | |
| 147-335, gnl|canFam2|chr2 (11456058-11455863) | |
| 147-335, gnl|danRer3|chrUn (102088148-102087955) | |
| 147-335, gnl|dasNov1|scaffold_7976 (2410-2214) | |
| 147-335, gnl|echTel1|scaffold_255791 (708-512) | |
| 147-335, gnl|fr1|chrUn (108423766-108423573) | |
| 147-335, gnl|galGal2|chr2 (16084241-16084045) | |
| 147-335, gnl|hg17|chr10 (25266116-25266312) | |
| 147-335, gnl|Hg17|chr10 (25266305-25266117) | |
| 147-335, gnl|loxAfr1|scaffold_34840 (10220-10020) | |
| 147-335, gnl|mm7|chr2 (21184969-21185165) | |
| 147-335, gnl|Mm7|chr2 (21185158-21184970) | |
| 147-335, gnl|monDom2|scaffold_7 (43633040-43632844) | |
| 147-335, gnl|oryCun1|scaffold_199169 (11454-11257) | |
| 147-335, gnl|panTro1|chr8 (25538047-25538243) | |
| 147-335, gnl|rheMac2|chr9 (25122434-25122630) | |
| 147-335, gnl|rn3|chr17 (95135372-95135568) | |
| 147-335, gnl|tetNig1|chrUn_random (35256649-35256842) | |
| 147-335, gnl|xenTro1|scaffold_42 (1598496-1598300) | |
| 493-724, gnl|bosTau2|chr13 (42370431-42370655) | |
| 527-723, gnl|bosTau2|chr13 (21292450-21292255) | |
| 528-698, gnl|bosTau2|chr10 (13787737-13787559) | |
| 536-682, gnl|bosTau2|chr10 (17963095-17963240) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mgp (0.230681) | |
| col (0.195008) | |
| ski (0.146735) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) | |
| col (0.195008) | |
| ski (0.146735) | |
| eru (0.120048) |