Ss1.1-Pig4-TMW8039A23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCGGGGACCCGAGAGAGCCTGGCCCCGGGCCCCGACGCCGCAACGGCCGATGAACTCAG CTCTCTCGGCTCGGACTCAGAGGCCAACGGCTTCGCTGAGCGCCGCATCGACAAGTTCGG CTTCATCGTGGGCTCGCAAGGCGCCGAGGGCGCGCTGGAGGAAGTTCCTCTGGAGGTGCT GAGGCAGAGGGAGTCCAAGTGGCTGGACATGCTCAACAACTGGGACAAATGGATGGCCAA GAAGCACAAAAAGATCCGTCTGCGGTGCCAGAAAGGCATTCCACCTTCTCTGCGGGGCCG TGCTTGGCAATACCTGTCAGGAGGCAAGGTGAAGCTGCAGCAGAACCCTGGAAAGTTCGA CGAGCTGGACATGTCCCCCGGGGACCCCAAGTGGCTGGATGTGATTGAGCGTGACCTGCA CCGGCAGTTCCCTTTCCACGAGATGTTTGTGTCCCGGGGGGGCCACGGCCAGCAGGACCT GTTCCGTGTGCTGAAGGCCTACACTCTCATGACAGCCTCCCACGTTTGCTCACTTGGACT GGCGCCCATTGCGGCTGTCCTGCTCATCTCTCTTGCTCCACAGCAAGCCTTCTGGTGCCT GGTGCAGATCTGTGAGAAGTACCTGCCTGGCTACTACAGTGAGAAACTGGAGGCCATCCA GCTGGATGGGGAGATCCTCTTCTCGCTGCTCCAGAAGGTGTCTCCTGTGGCCCACAAGCA CCTCAGCCAGCAGAAGATTGACCCCTTGCTCTACATGACAGAGTGGTTCATGTGTGCCTT CGCCCGCACCTTACCCTGGAGCTCCGTGCTGCGTGTCTGGGACATGTTCTTCTGCGAAGG AGTCAAGATCATCTTCCGGGTGGGGTTGGTGCTGCTGAAGCATGCGCTGGGCTCCCCCGA GAAGCTCAAAGCCTGCCAGGGCCAGTACGAGACCATTGAGCGGCTGAGGAGCCTCAGCCC CAAGATCATGGAGGAGGCCTTCCTGGTCCAGGAGGTGGTAGAGTTGTCAGTGACAGAGCG CCAGATTGAGCGCGAGCACCTCATCCAGCTGCGGCGCTGGCAGGAGACCCGGGGTGAACT GCAGTGCCACTCGTCGCCCAGGCTGCACGGCGCCAAGGCCATCCTGGAGGCAGAGCCTGG CCCATGGCCCACCTTGCAGCCTTCACCATCCATCCGCCTGCCTCCGGACGCCCCCCTCCC TGGCTCCAAAGGCAAGTCCAAGCCATCCAAGCAGGTCCAGAAGGAGCAGAAGGAACAGCG GAAGCAGGCGAAGGCGAGTGGGCAGCCAGACAAGCCCACAACCACAAGTCAAGCCAAAGT GGTGGCCGCTGCTGGAGATGCATGTCCCCCACAGGATGTGCCCTCGAAGGACCCAGGCCA CCAGGACCCAGCCCCTCAAGACTCAGCTCCCCAGGACACAGCCCACCACCGCTCCCAGGA GAGCCTGACATCCCAGGAGAGTGAGGACACCTACTTGTAACCATGGCAGCTCAGGCCCCG GGGCTGGGGTCTCCACACACCTATACAGTACATGGACTGACTTCAGGGCCTGCCCACCCT CTGAGGGCCCGGTCGCCTGGGTCGGCAGGGAGTCTGGCTGGCCCAGCACAGATTCTGCCT GAGCCTCCTTATTTATTTTCTCCAGAGTGGAGCTTGGGCAGGCCCAGCTGGGGCAGGCAG AAGTGGGTGAGGCCTTGTTTGGCCCCCTCCTCCTGGAGGCATGTTCTCCGGGACCAGGGC ACTGATGTGAGGGGAGAGGGAGGGATAAAGGGTGGGGTGCTCTTTGTGTAAAATAGAAAC ATGGTTTTGTACAGAAATAAACAGGCTTGTGTAGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCGGGGACCCGAGAGAGCCTGGCCCCGGGCCCCGACGCCGCAACGGCCGATGAACTCAG CTCTCTCGGCTCGGACTCAGAGGCCAACGGCTTCGCTGAGCGCCGCATCGACAAGTTCGG CTTCATCGTGGGCTCGCAAGGCGCCGAGGGCGCGCTGGAGGAAGTTCCTCTGGAGGTGCT GAGGCAGAGGGAGTCCAAGTGGCTGGACATGCTCAACAACTGGGACAAATGGATGGCCAA GAAGCACAAAAAGATCCGTCTGCGGTGCCAGAAAGGCATTCCACCTTCTCTGCGGGGCCG TGCTTGGCAATACCTGTCAGGAGGCAAGGTGAAGCTGCAGCAGAACCCTGGAAAGTTCGA CGAGCTGGACATGTCCCCCGGGGACCCCAAGTGGCTGGATGTGATTGAGCGTGACCTGCA CCGGCAGTTCCCTTTCCACGAGATGTTTGTGTCCCGGGGGGGCCACGGCCAGCAGGACCT GTTCCGTGTGCTGAAGGCCTACACTCTCATGACAGCCTCCCACGTTTGCTCACTTGGACT GGCGCCCATTGCGGCTGTCCTGCTCATCTCTCTTGCTCCACAGCAAGCCTTCTGGTGCCT GGTGCAGATCTGTGAGAAGTACCTGCCTGGCTACTACAGTGAGAAACTGGAGGCCATCCA GCTGGATGGGGAGATCCTCTTCTCGCTGCTCCAGAAGGTGTCTCCTGTGGCCCACAAGCA CCTCAGCCAGCAGAAGATTGACCCCTTGCTCTACATGACAGAGTGGTTCATGTGTGCCTT CGCCCGCACCTTACCCTGGAGCTCCGTGCTGCGTGTCTGGGACATGTTCTTCTGCGAAGG AGTCAAGATCATCTTCCGGGTGGGGTTGGTGCTGCTGAAGCATGCGCTGGGCTCCCCCGA GAAGCTCAAAGCCTGCCAGGGCCAGTACGAGACCATTGAGCGGCTGAGGAGCCTCAGCCC CAAGATCATGGAGGAGGCCTTCCTGGTCCAGGAGGTGGTAGAGTTGTCAGTGACAGAGCG CCAGATTGAGCGCGAGCACCTCATCCAGCTGCGGCGCTGGCAGGAGACCCGGGGTGAACT GCAGTGCCACTCGTCGCCCAGGCTGCACGGCGCCAAGGCCATCCTGGAGGCAGAGCCTGG CCCATGGCCCACCTTGCAGCCTTCACCATCCATCCGCCTGCCTCCGGACGCCCCCCTCCC TGGCTCCAAAGGCAAGTCCAAGCCATCCAAGCAGGTCCAGAAGGAGCAGAAGGAACAGCG GAAGCAGGCGAAGGCGAGTGGGCAGCCAGACAAGCCCACAACCACAAGTCAAGCCAAAGT GGTGGCCGCTGCTGGAGATGCATGTCCCCCACAGGATGTGCCCTCGAAGGACCCAGGCCA CCAGGACCCAGCCCCTCAAGACTCAGCTCCCCAGGACACAGCCCACCACCGCTCCCAGGA GAGCCTGACATCCCAGGAGAGTGAGGACACCTACTTGTAACCATGGCAGCTCAGGCCCCG GGGCTGGGGTCTCCACACACCTATACAGTACATGGACTGACTTCAGGGCCTGCCCACCCT CTGAGGGCCCGGTCGCCTGGGTCGGCAGGGAGTCTGGCTGGCCCAGCACAGATTCTGCCT GAGCCTCCTTATTTATTTTCTCCAGAGTGGAGCTTGGGCAGGCCCAGCTGGGGCAGGCAG AAGTGGGTGAGGCCTTGTTTGGCCCCCTCCTCCTGGAGGCATGTTCTCCGGGACCAGGGC ACTGATGTGAGGGGAGAGGGAGGGATAAAGGGTGGGGTGCTCTTTGTGTAAAATAGAAAC ATGGTTTTGTACAGAAATAAACAGGCTTGTGTAGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1291-1410, - strand, RNAz p=0.729469 | |
| 1564-1765, - strand, RNAz p=0.97244 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1291-1410, - strand, RNAz p=0.729469 | |
| 1564-1765, - strand, RNAz p=0.97244 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 356-490, gnl|bosTau2|chr17 (42508825-42508692) | |
| 356-490, gnl|Hg17|chr22 (29016392-29016259) | |
| 356-490, gnl|Mm7|chr11 (4164138-4164288) | |
| 649-840, gnl|bosTau2|chr17 (42507289-42507098) | |
| 649-840, gnl|canFam2|chr26 (26477921-26478120) | |
| 649-840, gnl|danRer3|chrUn (8700699-8700495) | |
| 649-840, gnl|dasNov1|scaffold_5013 (10220-10418) | |
| 649-840, gnl|echTel1|scaffold_308250 (45839-45642) | |
| 649-840, gnl|fr1|chrUn (48529338-48529138) | |
| 649-840, gnl|galGal2|chr15 (10727398-10727199) | |
| 649-840, gnl|hg17|chr22 (29014463-29014663) | |
| 649-840, gnl|Hg17|chr22 (29014654-29014463) | |
| 649-840, gnl|loxAfr1|scaffold_10283 (21850-22049) | |
| 649-840, gnl|mm7|chr11 (4165752-4165553) | |
| 649-840, gnl|Mm7|chr11 (4165559-4165750) | |
| 649-840, gnl|monDom2|scaffold_17 (8356080-8356279) | |
| 649-840, gnl|oryCun1|scaffold_165517 (670-467) | |
| 649-840, gnl|panTro1|chr23 (29109272-29109471) | |
| 649-840, gnl|rheMac2|chr10 (74145556-74145755) | |
| 649-840, gnl|rn3|chr14 (84855823-84855624) | |
| 649-840, gnl|tetNig1|chrUn_random (34379841-34379641) | |
| 649-840, gnl|xenTro1|scaffold_207 (893747-893940) | |
| 977-1835, gnl|bosTau2|chr17 (42506395-42505545) | |
| 977-1835, gnl|Hg17|chr22 (29013416-29012535) | |
| 977-1835, gnl|Mm7|chr11 (4166681-4167508) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 356-490, gnl|bosTau2|chr17 (42508825-42508692) | |
| 356-490, gnl|Hg17|chr22 (29016392-29016259) | |
| 356-490, gnl|Mm7|chr11 (4164138-4164288) | |
| 649-840, gnl|bosTau2|chr17 (42507289-42507098) | |
| 649-840, gnl|canFam2|chr26 (26477921-26478120) | |
| 649-840, gnl|danRer3|chrUn (8700699-8700495) | |
| 649-840, gnl|dasNov1|scaffold_5013 (10220-10418) | |
| 649-840, gnl|echTel1|scaffold_308250 (45839-45642) | |
| 649-840, gnl|fr1|chrUn (48529338-48529138) | |
| 649-840, gnl|galGal2|chr15 (10727398-10727199) | |
| 649-840, gnl|hg17|chr22 (29014463-29014663) | |
| 649-840, gnl|Hg17|chr22 (29014654-29014463) | |
| 649-840, gnl|loxAfr1|scaffold_10283 (21850-22049) | |
| 649-840, gnl|mm7|chr11 (4165752-4165553) | |
| 649-840, gnl|Mm7|chr11 (4165559-4165750) | |
| 649-840, gnl|monDom2|scaffold_17 (8356080-8356279) | |
| 649-840, gnl|oryCun1|scaffold_165517 (670-467) | |
| 649-840, gnl|panTro1|chr23 (29109272-29109471) | |
| 649-840, gnl|rheMac2|chr10 (74145556-74145755) | |
| 649-840, gnl|rn3|chr14 (84855823-84855624) | |
| 649-840, gnl|tetNig1|chrUn_random (34379841-34379641) | |
| 649-840, gnl|xenTro1|scaffold_207 (893747-893940) | |
| 977-1835, gnl|bosTau2|chr17 (42506395-42505545) | |
| 977-1835, gnl|Hg17|chr22 (29013416-29012535) | |
| 977-1835, gnl|Mm7|chr11 (4166681-4167508) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ebs (0.354904) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.354904) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| eep (0.122564) |