Ss1.1-Pig4-TMW8039B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGACGAACAGGAAGCGGCGGCCAGTGGCGGGCGGAGCCCGGGGCCGAGTCGCCTCCTCG GACGCCGCCGCCGCCGCCGCCAGTGCTAGGACCCCGACCTGGCGGGGCAGCGCTGGGCGG GCGTGCGGGCGGGGGCGCTGACGACGAACAGGAAGCGGCGGCCAAGCGGGCGTGGGTGGC TGGTCGCGGCGGAGGCGTGTGGGACGGCCCTCCTGGCTCAGCGTTATGGATCCAAGCCTT TTGAGAGAACGGGAGCTGTTCAGAAAACGGGCTCTTTCCACTCCTGTAGTAGAAAAACGC TCAGTATCTTCTGAGTCATCATCATCATCATCAAAGAAGAAAAAAGCAAAGCTAGAACAT GGAGGATCATCAAGCTCTAAACAAAATTCTGATCATAGCAATGGATCATTTAACTTGAAA GCACTATCAGGAAGCTCTGGATATAAGTTTGGCGTTCTTGCTAAGATTGTGAATTACATG AAGACACGGCATCAGCGAGGAGATACACATCCTCTTACTTTAGAAGAAATTTTGGATGAA ACACAACATTTAGATATTGGACTTAAGCAGAAACAATGGTTAATGACTGAGGCGTTAGTC AATAATCCCAAAATTGAAGTAATAGATGGAAAGTATGCCTTCAAGCCCAAGTACAACTTG AAAGATAAGAAGGCCCTACTTAGGCTCTTAGATAAACATGACCAGCGAGGCCTAGGAGGA ATTCTTTTAGAAGACATAGAGGAAGGACTCCCCAATTCCCAGAAAGCCGTCAAGGCTTTA GGGGACCAGATACTATTTGTAAATCGTCCTGATAAGAAGAAAATTCTTTTCTTCAATGAT AAAAGCTGTCAGTTTTCTGTGGATGAAGAGTTTCAGAAACTGTGGAGGAGTGTCACCGTG GATTCAATGGATGAGGAGAAAATTGAAGAGTATCTGAAGCGACAGGGTATTTCTTCCATG CAGGAATCCGGACCAAAGAAAGTGGCCCCTATTCAGAGAAGGAAGAAGCCTGCTTCTCAG AAAAAGCGACGGTTTAAGACTCACAATGAGCACTTGGCTGGGGTGCTGAAGGACTACTCA GACATTGCGCCTGGCAAGTAGTGAACACTTTTGTCTGAGAGCAAAGAGTTAGAAAGTCAA GATCTTCCTCGTTGACGCTGGGACATGAAGACTGGCCGTCTCCCCATTCTCCTTCTGAGG ACCGAGGAGAGGAGCAGTTGAGTTTACAGAACAAATGCAGATCACCAGTCTCGAAGCTTA TTGTAACTAATGGGCTAATGAGAAATGTGCTTTTCCCTGTTACCCTCTGTCACTTCTTGG GGGAAAGGCACTCAGCATGGCATGCAGGTGTCTTTGCTATTTATCTACTTCTAAGTGGTT CCTGGTTCCATTTTTCCTCTTGTATTACTTTAGAACAAGTTTGCCGATAGTCTTGAATGC AATATTTGTTTATTCCAAAGGAACATATTTATATTAAAATCATCGTAGAAGGAGCTCTAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGACGAACAGGAAGCGGCGGCCAGTGGCGGGCGGAGCCCGGGGCCGAGTCGCCTCCTCG GACGCCGCCGCCGCCGCCGCCAGTGCTAGGACCCCGACCTGGCGGGGCAGCGCTGGGCGG GCGTGCGGGCGGGGGCGCTGACGACGAACAGGAAGCGGCGGCCAAGCGGGCGTGGGTGGC TGGTCGCGGCGGAGGCGTGTGGGACGGCCCTCCTGGCTCAGCGTTATGGATCCAAGCCTT TTGAGAGAACGGGAGCTGTTCAGAAAACGGGCTCTTTCCACTCCTGTAGTAGAAAAACGC TCAGTATCTTCTGAGTCATCATCATCATCATCAAAGAAGAAAAAAGCAAAGCTAGAACAT GGAGGATCATCAAGCTCTAAACAAAATTCTGATCATAGCAATGGATCATTTAACTTGAAA GCACTATCAGGAAGCTCTGGATATAAGTTTGGCGTTCTTGCTAAGATTGTGAATTACATG AAGACACGGCATCAGCGAGGAGATACACATCCTCTTACTTTAGAAGAAATTTTGGATGAA ACACAACATTTAGATATTGGACTTAAGCAGAAACAATGGTTAATGACTGAGGCGTTAGTC AATAATCCCAAAATTGAAGTAATAGATGGAAAGTATGCCTTCAAGCCCAAGTACAACTTG AAAGATAAGAAGGCCCTACTTAGGCTCTTAGATAAACATGACCAGCGAGGCCTAGGAGGA ATTCTTTTAGAAGACATAGAGGAAGGACTCCCCAATTCCCAGAAAGCCGTCAAGGCTTTA GGGGACCAGATACTATTTGTAAATCGTCCTGATAAGAAGAAAATTCTTTTCTTCAATGAT AAAAGCTGTCAGTTTTCTGTGGATGAAGAGTTTCAGAAACTGTGGAGGAGTGTCACCGTG GATTCAATGGATGAGGAGAAAATTGAAGAGTATCTGAAGCGACAGGGTATTTCTTCCATG CAGGAATCCGGACCAAAGAAAGTGGCCCCTATTCAGAGAAGGAAGAAGCCTGCTTCTCAG AAAAAGCGACGGTTTAAGACTCACAATGAGCACTTGGCTGGGGTGCTGAAGGACTACTCA GACATTGCGCCTGGCAAGTAGTGAACACTTTTGTCTGAGAGCAAAGAGTTAGAAAGTCAA GATCTTCCTCGTTGACGCTGGGACATGAAGACTGGCCGTCTCCCCATTCTCCTTCTGAGG ACCGAGGAGAGGAGCAGTTGAGTTTACAGAACAAATGCAGATCACCAGTCTCGAAGCTTA TTGTAACTAATGGGCTAATGAGAAATGTGCTTTTCCCTGTTACCCTCTGTCACTTCTTGG GGGAAAGGCACTCAGCATGGCATGCAGGTGTCTTTGCTATTTATCTACTTCTAAGTGGTT CCTGGTTCCATTTTTCCTCTTGTATTACTTTAGAACAAGTTTGCCGATAGTCTTGAATGC AATATTTGTTTATTCCAAAGGAACATATTTATATTAAAATCATCGTAGAAGGAGCTCTAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 590-1412, - strand, RNAz p=0.930418 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 590-1412, - strand, RNAz p=0.930418 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 24-204, gnl|bosTau2|chr27 (16480455-16480278) | |
| 24-204, gnl|canFam2|chr16 (36653751-36653527) | |
| 24-204, gnl|echTel1|scaffold_279914 (42911-42723) | |
| 24-204, gnl|galGal2|chr4 (35182306-35182094) | |
| 24-204, gnl|hg17|chr8 (30634989-30635196) | |
| 24-204, gnl|Hg17|chr8 (30635269-30635071) | |
| 24-204, gnl|loxAfr1|scaffold_15091 (1414-1605) | |
| 24-204, gnl|mm7|chr8 (32500028-32499838) | |
| 24-204, gnl|Mm7|chr8 (32499785-32499973) | |
| 24-204, gnl|oryCun1|scaffold_105892 (5544-5729) | |
| 24-204, gnl|panTro1|chr7 (31707107-31707314) | |
| 24-204, gnl|rheMac2|chr8 (30910946-30911153) | |
| 24-204, gnl|rn3|chr16 (62218876-62219060) | |
| 219-412, gnl|bosTau2|chr27 (16475568-16475381) | |
| 219-412, gnl|Hg17|chr8 (30630664-30630465) | |
| 219-412, gnl|Mm7|chr8 (32503600-32503802) | |
| 590-775, gnl|bosTau2|chr27 (16433932-16433747) | |
| 590-775, gnl|canFam2|chr16 (36701899-36701682) | |
| 590-775, gnl|danRer3|chr1 (20153585-20153396) | |
| 590-775, gnl|dasNov1|scaffold_52396 (6190-6407) | |
| 590-775, gnl|echTel1|scaffold_231837 (721-936) | |
| 590-775, gnl|fr1|chrUn (272250829-272251034) | |
| 590-775, gnl|galGal2|chr4 (35196034-35195831) | |
| 590-775, gnl|hg17|chr8 (30589329-30589546) | |
| 590-775, gnl|Hg17|chr8 (30589542-30589357) | |
| 590-775, gnl|loxAfr1|scaffold_10065 (66698-66915) | |
| 590-775, gnl|mm7|chr8 (32526639-32526421) | |
| 590-775, gnl|Mm7|chr8 (32526423-32526608) | |
| 590-775, gnl|monDom2|scaffold_32 (11448333-11448113) | |
| 590-775, gnl|oryCun1|scaffold_155190 (6555-6338) | |
| 590-775, gnl|panTro1|chr7 (31661278-31661493) | |
| 590-775, gnl|rheMac2|chr8 (30865267-30865484) | |
| 590-775, gnl|rn3|chr16 (62187088-62187306) | |
| 590-775, gnl|tetNig1|chrUn_random (111791497-111791309) | |
| 590-775, gnl|xenTro1|scaffold_1429 (108654-108849) | |
| 984-1500, gnl|bosTau2|chr27 (16401311-16400792) | |
| 984-1500, gnl|Hg17|chr8 (30556097-30555575) | |
| 984-1500, gnl|Mm7|chr8 (32544321-32544843) | |
| 1097-1412, gnl|bosTau2|chr23 (36307108-36306783) | |
| 1097-1412, gnl|Hg17|chr8 (30555984-30555679) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-204, gnl|bosTau2|chr27 (16480455-16480278) | |
| 24-204, gnl|canFam2|chr16 (36653751-36653527) | |
| 24-204, gnl|echTel1|scaffold_279914 (42911-42723) | |
| 24-204, gnl|galGal2|chr4 (35182306-35182094) | |
| 24-204, gnl|hg17|chr8 (30634989-30635196) | |
| 24-204, gnl|Hg17|chr8 (30635269-30635071) | |
| 24-204, gnl|loxAfr1|scaffold_15091 (1414-1605) | |
| 24-204, gnl|mm7|chr8 (32500028-32499838) | |
| 24-204, gnl|Mm7|chr8 (32499785-32499973) | |
| 24-204, gnl|oryCun1|scaffold_105892 (5544-5729) | |
| 24-204, gnl|panTro1|chr7 (31707107-31707314) | |
| 24-204, gnl|rheMac2|chr8 (30910946-30911153) | |
| 24-204, gnl|rn3|chr16 (62218876-62219060) | |
| 219-412, gnl|bosTau2|chr27 (16475568-16475381) | |
| 219-412, gnl|Hg17|chr8 (30630664-30630465) | |
| 219-412, gnl|Mm7|chr8 (32503600-32503802) | |
| 590-775, gnl|bosTau2|chr27 (16433932-16433747) | |
| 590-775, gnl|canFam2|chr16 (36701899-36701682) | |
| 590-775, gnl|danRer3|chr1 (20153585-20153396) | |
| 590-775, gnl|dasNov1|scaffold_52396 (6190-6407) | |
| 590-775, gnl|echTel1|scaffold_231837 (721-936) | |
| 590-775, gnl|fr1|chrUn (272250829-272251034) | |
| 590-775, gnl|galGal2|chr4 (35196034-35195831) | |
| 590-775, gnl|hg17|chr8 (30589329-30589546) | |
| 590-775, gnl|Hg17|chr8 (30589542-30589357) | |
| 590-775, gnl|loxAfr1|scaffold_10065 (66698-66915) | |
| 590-775, gnl|mm7|chr8 (32526639-32526421) | |
| 590-775, gnl|Mm7|chr8 (32526423-32526608) | |
| 590-775, gnl|monDom2|scaffold_32 (11448333-11448113) | |
| 590-775, gnl|oryCun1|scaffold_155190 (6555-6338) | |
| 590-775, gnl|panTro1|chr7 (31661278-31661493) | |
| 590-775, gnl|rheMac2|chr8 (30865267-30865484) | |
| 590-775, gnl|rn3|chr16 (62187088-62187306) | |
| 590-775, gnl|tetNig1|chrUn_random (111791497-111791309) | |
| 590-775, gnl|xenTro1|scaffold_1429 (108654-108849) | |
| 984-1500, gnl|bosTau2|chr27 (16401311-16400792) | |
| 984-1500, gnl|Hg17|chr8 (30556097-30555575) | |
| 984-1500, gnl|Mm7|chr8 (32544321-32544843) | |
| 1097-1412, gnl|bosTau2|chr23 (36307108-36306783) | |
| 1097-1412, gnl|Hg17|chr8 (30555984-30555679) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| ste (0.946458) | |
| pro (0.512033) | |
| ctl (0.459207) | |
| tes (0.415628) | |
| bla (0.373042) | |
| fty (0.351679) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| pla (0.267344) | |
| ova (0.258264) | |
| eep (0.245128) | |
| hea (0.204499) | |
| sag (0.182715) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.946458) | |
| pro (0.512033) | |
| ctl (0.459207) | |
| tes (0.415628) | |
| bla (0.373042) | |
| fty (0.351679) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| pla (0.267344) | |
| ova (0.258264) | |
| eep (0.245128) | |
| hea (0.204499) | |
| sag (0.182715) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |