Non-Coding RNA Search

Ss1.1-Pig4-TMW8039B02.5

Sequence:


               
               ACAGTCCTGCCGCCACCACCGCCACCGCTGCCAGTGTCGGGCTCTGCAAACCTTGCATGC
ACCACCCTCAGAGGCCAGGTTGTCAGGGCCACAGGCTTAGCTCAAATTGGTTCTTTAGTC
TGGAGACACAGAAGCCTGTTTTCTAGGTGTAATCTTCTAGATGCCCCCTTCTCCTTTCAC
AAAGATTGGCTCCGATGGTTTTTATATATAAATATATATATATAATAAAATATAATACAT
TTTTATACAGCAGACGTAAAAATCAAATTATTTTGAAAGGCAAAACTTATACACACACAT
ATATATTCTTTTTTTGTTCTATATATCACCTTTCTAAAAGAGACTGCTTAAGTCTTTTTT
TTTTTTTTTCTTCCTTCTGGGGGGGGACAAATTATTTGCTCAGATTGCCACAATTCAGTG
ATTTGGATGGGATGACTGACTTTTGCTCGTGGAAAACAAACATTAGAATTAGACACTAGG
GAGGGGGCACATCGGGTTTTTTGTGGTTTTTTTCCCATGCATTGCATTGAAAAAAATCAT
TAGATGTGACCATATTTGGCCCTATTCCCCCCTCCCCAACCTTGTTTGTTACACACTGTT
AAAAGTTTTTGTAACATCCATAAAAGGGGGATGAGAAGAATCCTGGGAGTGCCTGGGGGT
AAGGTGGAAAATGGAAGTCTTTCTTAATTCCTCTCAAGGCTGTTGCTTAACTCCATTTCA
GATAATTGGAGAGTGAAAAGTTAAAGCATGTCGGGAGGAATTGATGGTTTCTGTGAACTA
CTAGGTATGTCAATCCTCACACACTGCAAAGGTGATTTTTTTCGGGGGGGTGGGTTGTAG
TTAATTCTCTGCTTACAAAAAAAAAAAAAAAAAAAAAGTCTTGTAACCATTACCTATATG
CTAAATATTCCCCAACAATGAATAGATCCAAAAAGGAAAAAAAAAAAAATCATGCTTTCT
CTGTGTGTGTACCTATTGTATGTGCTAAACTTATTAGAAAATTTATATGCTTTTTAACAT
GTTGGGGGCAGAGGGGAAAGCCATGTTTTGACTTGCTAAAAATGGTGTTGTCAGACAGCC
CATGTAGCTCCCTGGTATTTTCATCTTTCTATCCAGCTCCCCCCTCCCCCAGTATACTTT
GATCCCTTTGAAAGGGTGCCTTGTATAATTTTATATATTTTATTTGAAGAGTTATTTCTT
ATCTCTTATTCTGAATTAAATTAAACGTTTGTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTCCTGCCGCCACCACCGCCACCGCTGCCAGTGTCGGGCTCTGCAAACCTTGCATGC
ACCACCCTCAGAGGCCAGGTTGTCAGGGCCACAGGCTTAGCTCAAATTGGTTCTTTAGTC
TGGAGACACAGAAGCCTGTTTTCTAGGTGTAATCTTCTAGATGCCCCCTTCTCCTTTCAC
AAAGATTGGCTCCGATGGTTTTTATATATAAATATATATATATAATAAAATATAATACAT
TTTTATACAGCAGACGTAAAAATCAAATTATTTTGAAAGGCAAAACTTATACACACACAT
ATATATTCTTTTTTTGTTCTATATATCACCTTTCTAAAAGAGACTGCTTAAGTCTTTTTT
TTTTTTTTTCTTCCTTCTGGGGGGGGACAAATTATTTGCTCAGATTGCCACAATTCAGTG
ATTTGGATGGGATGACTGACTTTTGCTCGTGGAAAACAAACATTAGAATTAGACACTAGG
GAGGGGGCACATCGGGTTTTTTGTGGTTTTTTTCCCATGCATTGCATTGAAAAAAATCAT
TAGATGTGACCATATTTGGCCCTATTCCCCCCTCCCCAACCTTGTTTGTTACACACTGTT
AAAAGTTTTTGTAACATCCATAAAAGGGGGATGAGAAGAATCCTGGGAGTGCCTGGGGGT
AAGGTGGAAAATGGAAGTCTTTCTTAATTCCTCTCAAGGCTGTTGCTTAACTCCATTTCA
GATAATTGGAGAGTGAAAAGTTAAAGCATGTCGGGAGGAATTGATGGTTTCTGTGAACTA
CTAGGTATGTCAATCCTCACACACTGCAAAGGTGATTTTTTTCGGGGGGGTGGGTTGTAG
TTAATTCTCTGCTTACAAAAAAAAAAAAAAAAAAAAAGTCTTGTAACCATTACCTATATG
CTAAATATTCCCCAACAATGAATAGATCCAAAAAGGAAAAAAAAAAAAATCATGCTTTCT
CTGTGTGTGTACCTATTGTATGTGCTAAACTTATTAGAAAATTTATATGCTTTTTAACAT
GTTGGGGGCAGAGGGGAAAGCCATGTTTTGACTTGCTAAAAATGGTGTTGTCAGACAGCC
CATGTAGCTCCCTGGTATTTTCATCTTTCTATCCAGCTCCCCCCTCCCCCAGTATACTTT
GATCCCTTTGAAAGGGTGCCTTGTATAATTTTATATATTTTATTTGAAGAGTTATTTCTT
ATCTCTTATTCTGAATTAAATTAAACGTTTGTTTTA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               272-478, gnl|bosTau2|chr6 (19552492-19552688)
               

               
               272-478, gnl|Hg17|chr5 (174089515-174089702)
               

               
               272-478, gnl|Mm7|chr13 (52503512-52503335)
               


               
               532-1236, gnl|bosTau2|chr6 (19552784-19553468)
               

               
               532-1236, gnl|Hg17|chr5 (174089787-174090477)
               

               
               532-1236, gnl|Mm7|chr13 (52503248-52502535)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               272-478, gnl|bosTau2|chr6 (19552492-19552688)
               

               
               272-478, gnl|Hg17|chr5 (174089515-174089702)
               

               
               272-478, gnl|Mm7|chr13 (52503512-52503335)
               


               
               532-1236, gnl|bosTau2|chr6 (19552784-19553468)
               

               
               532-1236, gnl|Hg17|chr5 (174089787-174090477)
               

               
               532-1236, gnl|Mm7|chr13 (52503248-52502535)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               pla (0.133672)
               

               
               ute (0.132784)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               pla (0.133672)
               

               
               ute (0.132784)

	272-478, gnl\|bosTau2\|chr6 (19552492-19552688)
	272-478, gnl\|Hg17\|chr5 (174089515-174089702)
	272-478, gnl\|Mm7\|chr13 (52503512-52503335)

	532-1236, gnl\|bosTau2\|chr6 (19552784-19553468)
	532-1236, gnl\|Hg17\|chr5 (174089787-174090477)
	532-1236, gnl\|Mm7\|chr13 (52503248-52502535)