Ss1.1-Pig4-TMW8039B07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTCTCTGCACTATGGATCTTGAGCCTTTAGGTTTCTCTAATCAGCTCTGCTGGACCGC CACGTAGACAGCTCTCTGAGGCCCTGTTTTGCATGAGAGCAGCCGAAGGTTGAGAGGGAA CAGTAAAGCCGAAGTCGGTTCTCTTTCATGGCAACACACGTTGTCTGACATTCAGCCAGC TTTTTAAGTTTTTTTCCAGTAACTTCCCTGTTCTCCTGGCCTCTATTCAGAAAAAGCAGT TAGAACGTTTCTCCCTGAACTCGTGAGTCCGGGACTGTGTAGCTCGCAGTCTCGGCAGTG GACTTAGACGCGTAGCGACGTGGCCGAGGTGGCGCAGACGGGTGTTGGGGTCCCCCGGGT GTTGCAGTTCTTCCTGCCTTTGCTTTGCAGGAATTACATGAACGACAGCCTTCGCACAGA TGTTTTTGTGAGGTTCCAGCCCGAGAGCATCGCCTGTGCCTGCATTTACCTCGCTGCCCG GACGCTGGAGATCCCTCTGCCCAATCGTCCCCACTGGTTTCTTCTGTTTGGAGCAACTGA GGAAGAAATTCAAGAAATCTGCTTAAAAATCCTCCAGCTTTACACTCGGAAAAAGGTGGA CCTGACGCAGCTGGAGAGTGAGGTGGAGAAGCGTAGGCACGCCCTGGACGAGGCAAAGGC CCAGGCCAAGGGCCTGCTGCCTGGCGGCGGTGGCGGCGGAGGCACCCAGGTGCTGGAGAG CGCGTCGCGGTTCTCACCTGCCCCGAAGCCGGGCTCCCCCCAGGAGGGCAAAGGAAACAA GCCCTCCCCGCTCTCTGCGAAGAATGCCAGGAGGAGGACGGAGGGCGCGAAGAAGGCCAA GGCCGACAGCCCGGTGAATGGCCTGCCCAAGGGCCGAGGGAGCCGGAGTCGGAGCGGGAG CCACGAGCAGAGCTACTCAAGGTCCCCGTCGCGATCCGCTTCCCCTAAAAGGAGGAAGAG TGACAGCGGCTCCACGTCTGGCGGGTCCAAGTCACAGAGCCGCTCGCGGAGCCGGAGTGA CTCCCCGCCAAGACAGGCCCACCGTGGTGCCACCTACAAGGGCTCCAAGGTGAGGGGCTA CCACAAGGCCAAGGACTGCAAGTTCTCCGCACAGAAGCCCCGCAAGTCCCGCAGCCGCAG CTCCTCCCGCTCTCGGAGCCGCTCAAGAGAGCGGGCAGATAATTCTGGAAAATACAAGAA AAAAAGTCACTACTACAGAGACCAGCGACGGGAACGTTCTCGATCTTACGAGCGAACAGG TCGTCGCTACGAGCGGGACCACCCTGGGCACAGCCGGCACCGGAGGTGAGGGATGGTCCC TCGGCGTGCACACCTCAGCCCCTGGCCCCGGGGCACGGCTCTTTCTTGGAAACGGCTGTT GACCCTGGGCCTCGAGATGACTTTGGAGACGGAATTGAGAGGAGGGCAAGGTGCCCTCAA GCCTGGCCCGGGCCCGGCCCCCACCTGTCCTGCAGAGCCCCCCACAGCAGCCGGCGGCCG AGGCCCGCGTCCTCGTGGTGTGGCTTGGTGCTAAGGACAAGCGGTCTCCACCCCTGTACC GACCCTCAATTACGTTAAACCAAGAAAATGACTCTTTGAACCTTTGCCTATATTAGGTTG TACTTATGTACGTATCTTGCAGTGTTTGACATGAGAAAATGGCCTTAACAGCCCCTCACT CCCTGCCCATGTTGTAAATAAACGTGTTTCGTACACGTTACAGCTGTATCGGAAAACTCA GAACTTGAATTCTGTCAGCTTAAAACATGTAGAGGATTCTGATTTTTTAAATGTGAAGGT ATTTCGATCTGTGTTGAAAGTCCTATATTTTTATCTGCGACGCTGAGTGCAGGCCACCAG CTCCAATACTGAGGCATTTCGTATATATGCATTTTATGTGGTTAAATAAACACAGTTCTC TCTACTCAGGACATTTGGAACTTTAGAGAATTTGTGGTGTGTCCTCCTGCTTGCTGGATA CCGGGCTCAGCCCGCAGCATCCGTTCTAGTGCTTTGTCTGCGCTGCCATCTCGAGCTCAT TAAAGCGTTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTCTCTGCACTATGGATCTTGAGCCTTTAGGTTTCTCTAATCAGCTCTGCTGGACCGC CACGTAGACAGCTCTCTGAGGCCCTGTTTTGCATGAGAGCAGCCGAAGGTTGAGAGGGAA CAGTAAAGCCGAAGTCGGTTCTCTTTCATGGCAACACACGTTGTCTGACATTCAGCCAGC TTTTTAAGTTTTTTTCCAGTAACTTCCCTGTTCTCCTGGCCTCTATTCAGAAAAAGCAGT TAGAACGTTTCTCCCTGAACTCGTGAGTCCGGGACTGTGTAGCTCGCAGTCTCGGCAGTG GACTTAGACGCGTAGCGACGTGGCCGAGGTGGCGCAGACGGGTGTTGGGGTCCCCCGGGT GTTGCAGTTCTTCCTGCCTTTGCTTTGCAGGAATTACATGAACGACAGCCTTCGCACAGA TGTTTTTGTGAGGTTCCAGCCCGAGAGCATCGCCTGTGCCTGCATTTACCTCGCTGCCCG GACGCTGGAGATCCCTCTGCCCAATCGTCCCCACTGGTTTCTTCTGTTTGGAGCAACTGA GGAAGAAATTCAAGAAATCTGCTTAAAAATCCTCCAGCTTTACACTCGGAAAAAGGTGGA CCTGACGCAGCTGGAGAGTGAGGTGGAGAAGCGTAGGCACGCCCTGGACGAGGCAAAGGC CCAGGCCAAGGGCCTGCTGCCTGGCGGCGGTGGCGGCGGAGGCACCCAGGTGCTGGAGAG CGCGTCGCGGTTCTCACCTGCCCCGAAGCCGGGCTCCCCCCAGGAGGGCAAAGGAAACAA GCCCTCCCCGCTCTCTGCGAAGAATGCCAGGAGGAGGACGGAGGGCGCGAAGAAGGCCAA GGCCGACAGCCCGGTGAATGGCCTGCCCAAGGGCCGAGGGAGCCGGAGTCGGAGCGGGAG CCACGAGCAGAGCTACTCAAGGTCCCCGTCGCGATCCGCTTCCCCTAAAAGGAGGAAGAG TGACAGCGGCTCCACGTCTGGCGGGTCCAAGTCACAGAGCCGCTCGCGGAGCCGGAGTGA CTCCCCGCCAAGACAGGCCCACCGTGGTGCCACCTACAAGGGCTCCAAGGTGAGGGGCTA CCACAAGGCCAAGGACTGCAAGTTCTCCGCACAGAAGCCCCGCAAGTCCCGCAGCCGCAG CTCCTCCCGCTCTCGGAGCCGCTCAAGAGAGCGGGCAGATAATTCTGGAAAATACAAGAA AAAAAGTCACTACTACAGAGACCAGCGACGGGAACGTTCTCGATCTTACGAGCGAACAGG TCGTCGCTACGAGCGGGACCACCCTGGGCACAGCCGGCACCGGAGGTGAGGGATGGTCCC TCGGCGTGCACACCTCAGCCCCTGGCCCCGGGGCACGGCTCTTTCTTGGAAACGGCTGTT GACCCTGGGCCTCGAGATGACTTTGGAGACGGAATTGAGAGGAGGGCAAGGTGCCCTCAA GCCTGGCCCGGGCCCGGCCCCCACCTGTCCTGCAGAGCCCCCCACAGCAGCCGGCGGCCG AGGCCCGCGTCCTCGTGGTGTGGCTTGGTGCTAAGGACAAGCGGTCTCCACCCCTGTACC GACCCTCAATTACGTTAAACCAAGAAAATGACTCTTTGAACCTTTGCCTATATTAGGTTG TACTTATGTACGTATCTTGCAGTGTTTGACATGAGAAAATGGCCTTAACAGCCCCTCACT CCCTGCCCATGTTGTAAATAAACGTGTTTCGTACACGTTACAGCTGTATCGGAAAACTCA GAACTTGAATTCTGTCAGCTTAAAACATGTAGAGGATTCTGATTTTTTAAATGTGAAGGT ATTTCGATCTGTGTTGAAAGTCCTATATTTTTATCTGCGACGCTGAGTGCAGGCCACCAG CTCCAATACTGAGGCATTTCGTATATATGCATTTTATGTGGTTAAATAAACACAGTTCTC TCTACTCAGGACATTTGGAACTTTAGAGAATTTGTGGTGTGTCCTCCTGCTTGCTGGATA CCGGGCTCAGCCCGCAGCATCCGTTCTAGTGCTTTGTCTGCGCTGCCATCTCGAGCTCAT TAAAGCGTTGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-493, gnl|bosTau2|chr16 (37861661-37862162) | |
| 1-493, gnl|Hg17|chr1 (1411935-1411410) | |
| 1-493, gnl|Mm7|chr4 (154809517-154809973) | |
| 594-753, gnl|bosTau2|chr16 (37862526-37862670) | |
| 594-753, gnl|Hg17|chr1 (1411020-1410876) | |
| 594-753, gnl|Mm7|chr4 (154810513-154810657) | |
| 953-1316, gnl|bosTau2|chr16 (37863585-37863948) | |
| 953-1316, gnl|canFam2|chr5 (59544399-59544023) | |
| 953-1316, gnl|canFam2|chr5 (59543982-59544247) | |
| 953-1316, gnl|danRer3|chr18 (44650921-44651359) | |
| 953-1316, gnl|dasNov1|scaffold_36307 (6341-6714) | |
| 953-1316, gnl|dasNov1|scaffold_36307 (6780-6493) | |
| 953-1316, gnl|echTel1|scaffold_40882 (287-657) | |
| 953-1316, gnl|echTel1|scaffold_40882 (734-437) | |
| 953-1316, gnl|galGal2|chr21 (2118672-2119044) | |
| 953-1316, gnl|galGal2|chr21 (2119123-2118824) | |
| 953-1316, gnl|hg17|chr1_random (371084-371454) | |
| 953-1316, gnl|Hg17|chr1_random (371096-371456) | |
| 953-1316, gnl|hg17|chr4 (42404306-42404607) | |
| 953-1316, gnl|loxAfr1|scaffold_16891 (24055-23683) | |
| 953-1316, gnl|loxAfr1|scaffold_16891 (23599-23903) | |
| 953-1316, gnl|mm7|chr4 (154812871-154813244) | |
| 953-1316, gnl|Mm7|chr4 (154812883-154813244) | |
| 953-1316, gnl|mm7|chr5 (67107051-67107342) | |
| 953-1316, gnl|monDom2|scaffold_196 (245452-245081) | |
| 953-1316, gnl|monDom2|scaffold_5 (103660810-103661114) | |
| 953-1316, gnl|panTro1|chr1 (1304328-1303958) | |
| 953-1316, gnl|panTro1|chr3 (45094721-45095022) | |
| 953-1316, gnl|rheMac2|chr1 (4464729-4464359) | |
| 953-1316, gnl|rheMac2|chr5 (37636129-37636431) | |
| 953-1316, gnl|rn3|chr14 (43022861-43022561) | |
| 953-1316, gnl|rn3|chr5 (172687241-172687614) | |
| 953-1316, gnl|xenTro1|scaffold_414 (288098-288455) | |
| 1318-2051, gnl|bosTau2|chr16 (37863973-37864703) | |
| 1318-2051, gnl|Hg17|chr1_random (371516-372307) | |
| 1318-2051, gnl|Mm7|chr4 (154813268-154814078) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-493, gnl|bosTau2|chr16 (37861661-37862162) | |
| 1-493, gnl|Hg17|chr1 (1411935-1411410) | |
| 1-493, gnl|Mm7|chr4 (154809517-154809973) | |
| 594-753, gnl|bosTau2|chr16 (37862526-37862670) | |
| 594-753, gnl|Hg17|chr1 (1411020-1410876) | |
| 594-753, gnl|Mm7|chr4 (154810513-154810657) | |
| 953-1316, gnl|bosTau2|chr16 (37863585-37863948) | |
| 953-1316, gnl|canFam2|chr5 (59544399-59544023) | |
| 953-1316, gnl|canFam2|chr5 (59543982-59544247) | |
| 953-1316, gnl|danRer3|chr18 (44650921-44651359) | |
| 953-1316, gnl|dasNov1|scaffold_36307 (6341-6714) | |
| 953-1316, gnl|dasNov1|scaffold_36307 (6780-6493) | |
| 953-1316, gnl|echTel1|scaffold_40882 (287-657) | |
| 953-1316, gnl|echTel1|scaffold_40882 (734-437) | |
| 953-1316, gnl|galGal2|chr21 (2118672-2119044) | |
| 953-1316, gnl|galGal2|chr21 (2119123-2118824) | |
| 953-1316, gnl|hg17|chr1_random (371084-371454) | |
| 953-1316, gnl|Hg17|chr1_random (371096-371456) | |
| 953-1316, gnl|hg17|chr4 (42404306-42404607) | |
| 953-1316, gnl|loxAfr1|scaffold_16891 (24055-23683) | |
| 953-1316, gnl|loxAfr1|scaffold_16891 (23599-23903) | |
| 953-1316, gnl|mm7|chr4 (154812871-154813244) | |
| 953-1316, gnl|Mm7|chr4 (154812883-154813244) | |
| 953-1316, gnl|mm7|chr5 (67107051-67107342) | |
| 953-1316, gnl|monDom2|scaffold_196 (245452-245081) | |
| 953-1316, gnl|monDom2|scaffold_5 (103660810-103661114) | |
| 953-1316, gnl|panTro1|chr1 (1304328-1303958) | |
| 953-1316, gnl|panTro1|chr3 (45094721-45095022) | |
| 953-1316, gnl|rheMac2|chr1 (4464729-4464359) | |
| 953-1316, gnl|rheMac2|chr5 (37636129-37636431) | |
| 953-1316, gnl|rn3|chr14 (43022861-43022561) | |
| 953-1316, gnl|rn3|chr5 (172687241-172687614) | |
| 953-1316, gnl|xenTro1|scaffold_414 (288098-288455) | |
| 1318-2051, gnl|bosTau2|chr16 (37863973-37864703) | |
| 1318-2051, gnl|Hg17|chr1_random (371516-372307) | |
| 1318-2051, gnl|Mm7|chr4 (154813268-154814078) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| thg (0.633955) | |
| fce (0.543183) | |
| cbe (0.478469) | |
| fcc (0.39557) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| fty (0.351679) | |
| ill (0.351185) | |
| med (0.348756) | |
| cte (0.29274) | |
| ova (0.258264) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| eje (0.197668) | |
| aor (0.195274) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| cut (0.169924) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.633955) | |
| fce (0.543183) | |
| cbe (0.478469) | |
| fcc (0.39557) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| fty (0.351679) | |
| ill (0.351185) | |
| med (0.348756) | |
| cte (0.29274) | |
| ova (0.258264) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| eje (0.197668) | |
| aor (0.195274) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| cut (0.169924) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |