Non-Coding RNA Search

Ss1.1-Pig4-TMW8039B14.3

Sequence:


               
               TTTCCCAAGAGGCTTTAAGAAACATTTGACTCATTGTCAAAGCCGGCACAATGAGGAGGC
AAATAAAAAGCTAATGGAAGCTCTTGACCCTCCACTGGAGGAGCAGCAAATTTGATTTTT
AAACACAGTGTGGACATATGCTCCACAGAGTTGTTTCTCGAAACCATTTGTTGAAAGTAT
GGTTGAATAGTCTAGGTGGATCATAGGTGTTGACGTTGTATGGTGTACTGTGTTTAATTG
TCTCAGTAGTGTTACAGAGAATAAGCATTTGGTTATTTTTTTCTTGGTCTCTGTTTATGT
GACTACCTTGTAAGTCAGTAAATTCATATTGTATATTCCAGATAAGTAAAATTTCTCTAA
TTGCAGTATATTTGAAAAATTTGAAGAGGTAGGTATTCCATTTAACAATCAAGAGCAAGT
TTTATTCAATTTAAAACATCTAGGTAAAGTGTATCTTTTTTGTGAAACGAATTTCAGACA
ATGGGAATTATTTGATGGAATGTGTAAGAATTAGGCATGAAGATTTTGGGAAATTTTGTT
CTCAAATGTTTTCAGATCAAAGAATTATTTTAAAGGTTCTATTTGATCATATAAAATCAG
TTTATTTATAAATCTTAAATTACTTCCAGGTGTTCATTAGCTTTTATGTCATGGAAAATT
GGAATCTCAGGGTTGCTGATTTTCTGCTAAAGGGGGGAAATTGAGTCAGTTTAAAAACTA
GTTTGCAGCCTTGTCCTATAGGAAACTGAGAACATGAGTGTGATTTTAGGTCCTGTCCTT
CCTTGTTTCTTTGGAGTCTTCCATTCTGTACTTTACCCCAAGATCTTGCCTTTCGCTTCC
CTGTGCCCTCACACCAACAGGTGATCCTTACTTGCCAAACGTGTTAGAGCTGTACCTCCT
ACTCCTGGGCCTTAGGCACCATCCGTCAGGGCTTCAGACCAGGGTAATGAGCAGGAACAG
AAAGTCTTCCAGATTCACAACAAAAAATTTTATAAATAGACATTTCTGTTTAAGAATATG
TCAATTTTATGTTTTTCATGGTTGTTACTGTAAATACCTTGTGCCTGTTTATGGATTATT
TTATTCTAAAATATTTTGTCAAATGTGTATCAACCAGATTAAAAAACAAAGGCTTTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCCAAGAGGCTTTAAGAAACATTTGACTCATTGTCAAAGCCGGCACAATGAGGAGGC
AAATAAAAAGCTAATGGAAGCTCTTGACCCTCCACTGGAGGAGCAGCAAATTTGATTTTT
AAACACAGTGTGGACATATGCTCCACAGAGTTGTTTCTCGAAACCATTTGTTGAAAGTAT
GGTTGAATAGTCTAGGTGGATCATAGGTGTTGACGTTGTATGGTGTACTGTGTTTAATTG
TCTCAGTAGTGTTACAGAGAATAAGCATTTGGTTATTTTTTTCTTGGTCTCTGTTTATGT
GACTACCTTGTAAGTCAGTAAATTCATATTGTATATTCCAGATAAGTAAAATTTCTCTAA
TTGCAGTATATTTGAAAAATTTGAAGAGGTAGGTATTCCATTTAACAATCAAGAGCAAGT
TTTATTCAATTTAAAACATCTAGGTAAAGTGTATCTTTTTTGTGAAACGAATTTCAGACA
ATGGGAATTATTTGATGGAATGTGTAAGAATTAGGCATGAAGATTTTGGGAAATTTTGTT
CTCAAATGTTTTCAGATCAAAGAATTATTTTAAAGGTTCTATTTGATCATATAAAATCAG
TTTATTTATAAATCTTAAATTACTTCCAGGTGTTCATTAGCTTTTATGTCATGGAAAATT
GGAATCTCAGGGTTGCTGATTTTCTGCTAAAGGGGGGAAATTGAGTCAGTTTAAAAACTA
GTTTGCAGCCTTGTCCTATAGGAAACTGAGAACATGAGTGTGATTTTAGGTCCTGTCCTT
CCTTGTTTCTTTGGAGTCTTCCATTCTGTACTTTACCCCAAGATCTTGCCTTTCGCTTCC
CTGTGCCCTCACACCAACAGGTGATCCTTACTTGCCAAACGTGTTAGAGCTGTACCTCCT
ACTCCTGGGCCTTAGGCACCATCCGTCAGGGCTTCAGACCAGGGTAATGAGCAGGAACAG
AAAGTCTTCCAGATTCACAACAAAAAATTTTATAAATAGACATTTCTGTTTAAGAATATG
TCAATTTTATGTTTTTCATGGTTGTTACTGTAAATACCTTGTGCCTGTTTATGGATTATT
TTATTCTAAAATATTTTGTCAAATGTGTATCAACCAGATTAAAAAACAAAGGCTTTCATG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1140, gnl|bosTau2|chr12 (47787886-47786785)
               

               
               1-1140, gnl|Hg17|chr13 (114109744-114110896)
               

               
               1-1140, gnl|Mm7|chr8 (13854358-13855853)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1140, gnl|bosTau2|chr12 (47787886-47786785)
               

               
               1-1140, gnl|Hg17|chr13 (114109744-114110896)
               

               
               1-1140, gnl|Mm7|chr8 (13854358-13855853)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-1140, gnl\|bosTau2\|chr12 (47787886-47786785)
	1-1140, gnl\|Hg17\|chr13 (114109744-114110896)
	1-1140, gnl\|Mm7\|chr8 (13854358-13855853)

	fce (0.271592)
	sag (0.182715)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	nca (0.136874)
	kid (0.129735)
	ova (0.129132)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)