Non-Coding RNA Search

Ss1.1-Pig4-TMW8039B15.3

Sequence:


               
               TCCCACTCTTATGAAAGCAGCTGATATATAAGAACAGGCAGGAGGGAAACTTTCTGTGTC
CCTGACTCTCCTCAAGGAGTGGCCCTTTGAGGGCAGGGTCTGTGCTGCCTGCTGGTACCT
CACTCACCACCCCCCTCCCCAGCCCCCAGGCAGCCTCTGGGGGCTTCTTGCTTTCATTTT
CCGTGAATGTGCGTGGGAACAGAGGAGGAAAGTCTCTTACTGAAGTGCCTGAAACCCAGA
ACTAGAGCTTCTAGAGACGCTATTCTTTCTGTCCTGGCTTGGTTAACCTTTTCCCAACAC
TCCCTAGTCTCATGCTCCAGCTTCTCAGAAAGACTAAAAGAACTTGCTGTCCTAATTAAC
TAGAAAGCAAGACTCCATAGTCAAACCACAGCAAAAGGCAGAGAATTACAGGGAGACATG
ACTTATATTTTAATAGCCCAAATCTGCTCTCCCAAATCAATACACACACACACACTTTAG
AGGACTAAGAGCGAGAAGCATGTTGTTATATTTTATCCATCAAAAGAGCAATGCAAAAAT
AAATCAGCAGAATATGGAAAGCTCAGGATCTCTCCCAAGGCTACTACAGCAGGTGATGGG
AAGGATGGAAACAGGGATCGATTTTGTAGCTCATCCCGTGTGGACACCTTAGGATTAGCA
TCGTGGTAAAGATGATGAATGTGCTCTCTTCATTCCCTTTGGTCCACACCTTCCCATCGC
TGCCCAGTAGACGCGATTCATCATGTGGTTTCTCTGTCGTGTGCGTTCGAAATGTCCTAT
GAGCTTGTCCTGGTTGGTTAGGAATGAGTTACACTCTTTCCCGCCTCCTTCGGTCTAGGT
CTGGGGCCAGACTTCTGCTTGGTCCAAGCAGTCTCAAGGATTGGCATGGGGAGGGGGAAG
CTTTTTGGAATCACTTTTTGGTCACTGAGTCTGCCATTTTCAGAGTAAGATTTGCTCTAT
GGAAATCCACACATTAATAAAAACTACTTTCAAGTTGCCACACCATCTCACAGTGAAATA
TTTTGAGTAAAATTTTGTTGTTAGAATAGTTAGAGACAAAAGTTTTATCAGCAAACTGTT
TCGATGACGTTAATAAATAAGATGATGCTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCACTCTTATGAAAGCAGCTGATATATAAGAACAGGCAGGAGGGAAACTTTCTGTGTC
CCTGACTCTCCTCAAGGAGTGGCCCTTTGAGGGCAGGGTCTGTGCTGCCTGCTGGTACCT
CACTCACCACCCCCCTCCCCAGCCCCCAGGCAGCCTCTGGGGGCTTCTTGCTTTCATTTT
CCGTGAATGTGCGTGGGAACAGAGGAGGAAAGTCTCTTACTGAAGTGCCTGAAACCCAGA
ACTAGAGCTTCTAGAGACGCTATTCTTTCTGTCCTGGCTTGGTTAACCTTTTCCCAACAC
TCCCTAGTCTCATGCTCCAGCTTCTCAGAAAGACTAAAAGAACTTGCTGTCCTAATTAAC
TAGAAAGCAAGACTCCATAGTCAAACCACAGCAAAAGGCAGAGAATTACAGGGAGACATG
ACTTATATTTTAATAGCCCAAATCTGCTCTCCCAAATCAATACACACACACACACTTTAG
AGGACTAAGAGCGAGAAGCATGTTGTTATATTTTATCCATCAAAAGAGCAATGCAAAAAT
AAATCAGCAGAATATGGAAAGCTCAGGATCTCTCCCAAGGCTACTACAGCAGGTGATGGG
AAGGATGGAAACAGGGATCGATTTTGTAGCTCATCCCGTGTGGACACCTTAGGATTAGCA
TCGTGGTAAAGATGATGAATGTGCTCTCTTCATTCCCTTTGGTCCACACCTTCCCATCGC
TGCCCAGTAGACGCGATTCATCATGTGGTTTCTCTGTCGTGTGCGTTCGAAATGTCCTAT
GAGCTTGTCCTGGTTGGTTAGGAATGAGTTACACTCTTTCCCGCCTCCTTCGGTCTAGGT
CTGGGGCCAGACTTCTGCTTGGTCCAAGCAGTCTCAAGGATTGGCATGGGGAGGGGGAAG
CTTTTTGGAATCACTTTTTGGTCACTGAGTCTGCCATTTTCAGAGTAAGATTTGCTCTAT
GGAAATCCACACATTAATAAAAACTACTTTCAAGTTGCCACACCATCTCACAGTGAAATA
TTTTGAGTAAAATTTTGTTGTTAGAATAGTTAGAGACAAAAGTTTTATCAGCAAACTGTT
TCGATGACGTTAATAAATAAGATGATGCTAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-236, + strand, RNAz p=0.988513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-236, + strand, RNAz p=0.988513

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               197-279, + strand, RNAmicro p=0.999356

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               197-279, + strand, RNAmicro p=0.999356

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015039, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015039, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-475, gnl|bosTau2|chr16 (45189207-45188737)
               

               
               1-475, gnl|Hg17|chr1 (179950176-179949710)
               


               
               483-1110, gnl|bosTau2|chr16 (45188705-45188078)
               

               
               483-1110, gnl|Hg17|chr1 (179949673-179949034)
               

               
               483-1110, gnl|Mm7|chr1 (153079761-153080331)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-475, gnl|bosTau2|chr16 (45189207-45188737)
               

               
               1-475, gnl|Hg17|chr1 (179950176-179949710)
               


               
               483-1110, gnl|bosTau2|chr16 (45188705-45188078)
               

               
               483-1110, gnl|Hg17|chr1 (179949673-179949034)
               

               
               483-1110, gnl|Mm7|chr1 (153079761-153080331)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               che (0.272628)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               ski (0.146735)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               ski (0.146735)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	1-475, gnl\|bosTau2\|chr16 (45189207-45188737)
	1-475, gnl\|Hg17\|chr1 (179950176-179949710)

	483-1110, gnl\|bosTau2\|chr16 (45188705-45188078)
	483-1110, gnl\|Hg17\|chr1 (179949673-179949034)
	483-1110, gnl\|Mm7\|chr1 (153079761-153080331)

	che (0.272628)
	cbe (0.239234)
	pgl (0.236967)
	ece (0.229305)
	hea (0.204499)
	aor (0.195274)
	sto (0.179824)
	ski (0.146735)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)