Non-Coding RNA Search

Ss1.1-Pig4-TMW8039C06.3

Sequence:


               
               CATAGATTCCAAAAAGAAGTTCGATAAATGTGGCATTTGTGGAGGAAATGGATCTACATG
CAAGAAGATATCAGGATCAGTTACGAGTGCAAAACCTGGCTATCATGATATCGTCACAAT
TCCAACCGGAGCCACCAACATTGAAGTGAAACAGCGAAATCAGAGGGGTTCCAGAAATAA
TGGAAGCTTCCTTGCCATCAAAGCTGCCGATGGCACATACATCCTGAATGGCGACTTCAC
TTTGTCCACTTTAGAGCAAGACATCACATACAAAGGTAGTGTCTTGAGATACAGCGGTTC
CTCCGCAGCGCTGGAAAGAATTCGAAGCTTTAGCCCCCTCAAGGAGCCCTTAACCATCCA
AGTCCTGACGGTGGGCAATGCCCTTCGACCAAAAATTAAGTACACTTATTTTGTGAAGAA
GAAGAAGGAATCTTTCAATGCCATCCCTACTTTCTCAGAGTGGGTCATTGAAGAGTGGGG
CGAGTGTTCCAAGACATGCGGACTAGGTGTGCAGAGAAGGCTGGTGGAGTGCCGAGACAT
CAATGGGCAGCCTGCTTCCGAGTGTGCCAAGGAAGTGAAGCCAGCCAGCACCAGACCTTG
CGCGGACCTGCCATGCCCACATTGGCAGCTGGGGGACTGGTCGCCATGTTCCAAGACTTG
CGGGAAGGGTTACAAAAAGAGAACCTTGCAGTGTCTGTCCCATGATGGGGGGGTGTTGGC
GCATGAGAGCTGCGATCCTCTAAAGAAACCTAAACATTACATAGATTTCTGCACGATGGC
AGAGTGCAGTTAAGCAGGGGCTGTGTTGAGGGCAGAGGGCAGTGGGGAAGGGCTGATGCA
CTGAAATCAAGAAGGCTGGAGGAATCCAGGGCACCTTGCCAGTGATCAGCGAGGTGTGGC
GATGAGTTGCGAGGTAGAGGTAGGTAGAAAAGAAGTTAGGTCATCAGAATTTCCTGCCAG
TTACAAATTTGATAGGGTAGTTCCTGAGGATTATTCGTATCTGACCAATGATAGAGCATG
ATAAAGCCCCAGGGCATTATTATTTCTTCTGTTACGTCTGTGACAAGTTTTTACAGAAAT
AGAAACAATTGTCAAAGTAACTAAGAAATAAGGTAATCCTTGTTTCCTGGTACCGATGAA
GTGCTTTGTATCATGGAGGTTGGGACATGAAAAGCAGGAGGAAGATGAGGTTTTGGGCTT
AAGATAGGGCTTCCTTTACTTCACTAAGGCTGGAGTGAGAAAGGAGTCTGCATAGGATCT
TTAACCAGCTCTGTTCATGGCTGCTGTGGTTTCAGAGAATGTTCATGCCATCGCTTCTAT
TGAGAGCTAAGAATCCAAGATTGTCCAGCATGAGAAATGACTCACCTGACTCCATCCTTC
CTTTCTTGTGTCATTATTGTGTCTTTATTTGTGAGCTCATTTTGATGAAGAAACAATTCT
ATGTATTTGTAAAATCGGCATTTCAGTCTACAAGGGGAAAAAAAAAAAAAAAAGCAGTGA
TGTATCAGATGCTGTTAAAAGCTAGGGGAGGCCGGATGATCTGGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATAGATTCCAAAAAGAAGTTCGATAAATGTGGCATTTGTGGAGGAAATGGATCTACATG
CAAGAAGATATCAGGATCAGTTACGAGTGCAAAACCTGGCTATCATGATATCGTCACAAT
TCCAACCGGAGCCACCAACATTGAAGTGAAACAGCGAAATCAGAGGGGTTCCAGAAATAA
TGGAAGCTTCCTTGCCATCAAAGCTGCCGATGGCACATACATCCTGAATGGCGACTTCAC
TTTGTCCACTTTAGAGCAAGACATCACATACAAAGGTAGTGTCTTGAGATACAGCGGTTC
CTCCGCAGCGCTGGAAAGAATTCGAAGCTTTAGCCCCCTCAAGGAGCCCTTAACCATCCA
AGTCCTGACGGTGGGCAATGCCCTTCGACCAAAAATTAAGTACACTTATTTTGTGAAGAA
GAAGAAGGAATCTTTCAATGCCATCCCTACTTTCTCAGAGTGGGTCATTGAAGAGTGGGG
CGAGTGTTCCAAGACATGCGGACTAGGTGTGCAGAGAAGGCTGGTGGAGTGCCGAGACAT
CAATGGGCAGCCTGCTTCCGAGTGTGCCAAGGAAGTGAAGCCAGCCAGCACCAGACCTTG
CGCGGACCTGCCATGCCCACATTGGCAGCTGGGGGACTGGTCGCCATGTTCCAAGACTTG
CGGGAAGGGTTACAAAAAGAGAACCTTGCAGTGTCTGTCCCATGATGGGGGGGTGTTGGC
GCATGAGAGCTGCGATCCTCTAAAGAAACCTAAACATTACATAGATTTCTGCACGATGGC
AGAGTGCAGTTAAGCAGGGGCTGTGTTGAGGGCAGAGGGCAGTGGGGAAGGGCTGATGCA
CTGAAATCAAGAAGGCTGGAGGAATCCAGGGCACCTTGCCAGTGATCAGCGAGGTGTGGC
GATGAGTTGCGAGGTAGAGGTAGGTAGAAAAGAAGTTAGGTCATCAGAATTTCCTGCCAG
TTACAAATTTGATAGGGTAGTTCCTGAGGATTATTCGTATCTGACCAATGATAGAGCATG
ATAAAGCCCCAGGGCATTATTATTTCTTCTGTTACGTCTGTGACAAGTTTTTACAGAAAT
AGAAACAATTGTCAAAGTAACTAAGAAATAAGGTAATCCTTGTTTCCTGGTACCGATGAA
GTGCTTTGTATCATGGAGGTTGGGACATGAAAAGCAGGAGGAAGATGAGGTTTTGGGCTT
AAGATAGGGCTTCCTTTACTTCACTAAGGCTGGAGTGAGAAAGGAGTCTGCATAGGATCT
TTAACCAGCTCTGTTCATGGCTGCTGTGGTTTCAGAGAATGTTCATGCCATCGCTTCTAT
TGAGAGCTAAGAATCCAAGATTGTCCAGCATGAGAAATGACTCACCTGACTCCATCCTTC
CTTTCTTGTGTCATTATTGTGTCTTTATTTGTGAGCTCATTTTGATGAAGAAACAATTCT
ATGTATTTGTAAAATCGGCATTTCAGTCTACAAGGGGAAAAAAAAAAAAAAAAGCAGTGA
TGTATCAGATGCTGTTAAAAGCTAGGGGAGGCCGGATGATCTGGGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CH81_CAVPO

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CH81_CAVPO

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               809-958, + strand, RNAz p=0.990426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               809-958, + strand, RNAz p=0.990426

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               94-1545, gnl|bosTau2|chr1 (5835690-5834222)
               

               
               94-1545, gnl|Hg17|chr21 (27132468-27131002)
               

               
               94-1545, gnl|Mm7|chr16 (85792025-85790630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-1545, gnl|bosTau2|chr1 (5835690-5834222)
               

               
               94-1545, gnl|Hg17|chr21 (27132468-27131002)
               

               
               94-1545, gnl|Mm7|chr16 (85792025-85790630)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               eye (0.511509)
               

               
               pla (0.267344)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               pla (0.267344)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	94-1545, gnl\|bosTau2\|chr1 (5835690-5834222)
	94-1545, gnl\|Hg17\|chr21 (27132468-27131002)
	94-1545, gnl\|Mm7\|chr16 (85792025-85790630)

	eye (0.511509)
	pla (0.267344)
	bla (0.248694)
	jca (0.22792)
	gul (0.177588)
	fbs (0.175346)
	cut (0.169924)
	cki (0.165235)
	cag (0.151194)
	liv (0.146284)
	lnt (0.142308)
	cst (0.140036)
	ova (0.129132)
	eep (0.122564)
	med (0.116252)