Non-Coding RNA Search

Ss1.1-Pig4-TMW8039C10.3

Sequence:


               
               GTCAGATTTAAGTTTATCCTTTTGCTGGCTAATGTGCTGATAGCTAAGTCCAAATCTTGA
TGTGCTGTCCAGACACATAAGTGCTCAAAAAAGATGTGGAGTAGAAAGAGGCACCCAGCA
GAGAAATGTGGTTTCAAGGCTATGGAAGATCTCTCGCAAGTGTACAAGGCTGTATAGCAA
AAGGCATTGTATGGAAGTAGAGTAATGGATGAATAAATGAATATTCATGTGACTGGATGG
GGAGGCAAGTGGGGTTTAGAAAGAAGGCTACGTAATAAGTGGTAACAGAGTGCATGAGAA
GGACTAGAGAGGTCTGGGCAAGCAAGATAGACATGGGGTTGTGGTTGAGAATACATTCTG
AAGCCTGAAAGCTGATCTGTCTGAAGACAGAGCTGAGAGAAGATAGAAAAAGTAAGTGCC
TTAAGGATAAAAGATCTACGAATAAGGAGAAAGAAGAAATTCTGGAAGATAGAGATTAAA
AAAATATTTACTAAAAAATGAAAAGTCAGATGCAGCATATGATATGGAAAGAAGTTAGTT
ATTCCGGGTTTTAGAGAGGTTGAAATCCATCATGAAAATATAAGCAACCATCTGAAATGA
CCTGTTGATCTCAGAGGAAATGGGAAAGGGTGGCAGTCTGAACAAACGTGTGTTCCTGAC
CACTTCAAATGCTGGGGTTTAATGATGATAAGAAGAAATCCACTCTTTGTCTGAACTGGA
CCTGGTTTTCTAAGTACTGCTTTGGAAATGAAGACCAAGAGAAGCGAAATTTATGGTAGT
GTGTGAGGATTTGTGTTCCCTTTCTTTGTTTATGTTAATGAAATCCATTTTAAATTCATT
ATTGCTGTGCCCAGAAAGGCCACAGAGAAACAGTGGAACAATGGGGTTAAGTTAGACTAG
ACTAAGTCTTGGTTGACATCTGCTCCAAGAGCTACATGCCATGTTGGAACCATGTGTTTT
TCCAGTTCCATCCAGATATCCCACAAGAAAGCCATGATGTGGGGTTAAACCATATGTTTT
GAGTAGAGGCAAACAGAATAAGGGGGGTATCTGAAAGCGGGAAAGATATGAAGATGATCC
AAGGAAAGAGTCTAAAACAGAATAGCATCTGTTTTGCTCAAAACTACAAAAAAATGAAGA
AAATTACAGTTAAGGCTTAGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGATTTAAGTTTATCCTTTTGCTGGCTAATGTGCTGATAGCTAAGTCCAAATCTTGA
TGTGCTGTCCAGACACATAAGTGCTCAAAAAAGATGTGGAGTAGAAAGAGGCACCCAGCA
GAGAAATGTGGTTTCAAGGCTATGGAAGATCTCTCGCAAGTGTACAAGGCTGTATAGCAA
AAGGCATTGTATGGAAGTAGAGTAATGGATGAATAAATGAATATTCATGTGACTGGATGG
GGAGGCAAGTGGGGTTTAGAAAGAAGGCTACGTAATAAGTGGTAACAGAGTGCATGAGAA
GGACTAGAGAGGTCTGGGCAAGCAAGATAGACATGGGGTTGTGGTTGAGAATACATTCTG
AAGCCTGAAAGCTGATCTGTCTGAAGACAGAGCTGAGAGAAGATAGAAAAAGTAAGTGCC
TTAAGGATAAAAGATCTACGAATAAGGAGAAAGAAGAAATTCTGGAAGATAGAGATTAAA
AAAATATTTACTAAAAAATGAAAAGTCAGATGCAGCATATGATATGGAAAGAAGTTAGTT
ATTCCGGGTTTTAGAGAGGTTGAAATCCATCATGAAAATATAAGCAACCATCTGAAATGA
CCTGTTGATCTCAGAGGAAATGGGAAAGGGTGGCAGTCTGAACAAACGTGTGTTCCTGAC
CACTTCAAATGCTGGGGTTTAATGATGATAAGAAGAAATCCACTCTTTGTCTGAACTGGA
CCTGGTTTTCTAAGTACTGCTTTGGAAATGAAGACCAAGAGAAGCGAAATTTATGGTAGT
GTGTGAGGATTTGTGTTCCCTTTCTTTGTTTATGTTAATGAAATCCATTTTAAATTCATT
ATTGCTGTGCCCAGAAAGGCCACAGAGAAACAGTGGAACAATGGGGTTAAGTTAGACTAG
ACTAAGTCTTGGTTGACATCTGCTCCAAGAGCTACATGCCATGTTGGAACCATGTGTTTT
TCCAGTTCCATCCAGATATCCCACAAGAAAGCCATGATGTGGGGTTAAACCATATGTTTT
GAGTAGAGGCAAACAGAATAAGGGGGGTATCTGAAAGCGGGAAAGATATGAAGATGATCC
AAGGAAAGAGTCTAAAACAGAATAGCATCTGTTTTGCTCAAAACTACAAAAAAATGAAGA
AAATTACAGTTAAGGCTTAGATTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1016-1132, - strand, RNAz p=0.850256

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1016-1132, - strand, RNAz p=0.850256

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1164, gnl|bosTau2|chr3 (6833039-6834162)
               

               
               4-1164, gnl|Hg17|chr1 (159484642-159485770)
               

               
               4-1164, gnl|Mm7|chr1 (169951780-169950628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1164, gnl|bosTau2|chr3 (6833039-6834162)
               

               
               4-1164, gnl|Hg17|chr1 (159484642-159485770)
               

               
               4-1164, gnl|Mm7|chr1 (169951780-169950628)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	4-1164, gnl\|bosTau2\|chr3 (6833039-6834162)
	4-1164, gnl\|Hg17\|chr1 (159484642-159485770)
	4-1164, gnl\|Mm7\|chr1 (169951780-169950628)