Non-Coding RNA Search

Ss1.1-Pig4-TMW8039C15.3

Sequence:


               
               GCAGATCGGTTTGCAGGGCATTTCTTTGACCAAGTCTTCACTGTTGATGTGAAGCATCTC
TGTACATTTTTCCCGGGATGTACCGAGTGCTCAGTCGAGACAAGTCACTGAGGCAATAGT
TCCTCCGTAGCAGAGTCATGTTCTGACAAGACTCGGTGGTTCATGTTTGAAGAAAACATG
AGAAGCATTTACTTAGTAGAGCCCGACTAAGAACATTTTGTTCTGAAAGGACGGATCATC
TCTAAAATGAGGTGGCTGCAGCTGGCTTTCTCCCCGACCCACGTGGGTGCCAGAATGTCA
TGGTCAGTGGACACATCCCCCTGGAGAGACCCTCATGGGCGAGGAACTTGTCAAATAGGA
TAGATTCAGGACCTTTACCTCAGAATTATGTAAACTGTGATTGTGTTTTAGAAAAGTTAT
CATCTGCTAAAACCAGTTCAGTTTTTGTATATGTGTAAATGATCATGAACTTGAGTTTTA
TAAGATGTCCTGTACAGTAAAGCTATACCTCCAAGGTGTATCTTCGAGTGGATTCTTTCC
TGTCAAGTCTTATCTGCAACTCTGTGTTTGGGGAATGTTGTGTCTGTTGCTGTCTGCCCT
GTGTTGTTAAGGAGAGCAGCGTCACACAAATTCAAACACTCCTGTGACCCGTATTGTAGC
TTGTGCTGTTTCCTTTAGTCTTATTTTAGCCAGTAGACTCCCTCTCCTTCTTGTTGCATT
TCACGGGCCTGGGAGTCCCCCAGCGGAGGGTATTAGAGCCCCTTTGTTATCAATTACATC
TTTGTCTATGTATAATACTTCGTATTGGACATTTTACATGCTGCAAAATTGTGTAGATTT
CTAATACCAAAGACAGAAGTAAATGTTTTTCTGTAGGCTCTGTCTTGCCTGTATGCAGCC
CTGTGTAATATGGTGTAATATGGTGAACTGGAGTGTTATCTCACTTTGTAATATTTTGTA
AATATGTCAATATAATAAATGGTTACTCCTTGCATTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGATCGGTTTGCAGGGCATTTCTTTGACCAAGTCTTCACTGTTGATGTGAAGCATCTC
TGTACATTTTTCCCGGGATGTACCGAGTGCTCAGTCGAGACAAGTCACTGAGGCAATAGT
TCCTCCGTAGCAGAGTCATGTTCTGACAAGACTCGGTGGTTCATGTTTGAAGAAAACATG
AGAAGCATTTACTTAGTAGAGCCCGACTAAGAACATTTTGTTCTGAAAGGACGGATCATC
TCTAAAATGAGGTGGCTGCAGCTGGCTTTCTCCCCGACCCACGTGGGTGCCAGAATGTCA
TGGTCAGTGGACACATCCCCCTGGAGAGACCCTCATGGGCGAGGAACTTGTCAAATAGGA
TAGATTCAGGACCTTTACCTCAGAATTATGTAAACTGTGATTGTGTTTTAGAAAAGTTAT
CATCTGCTAAAACCAGTTCAGTTTTTGTATATGTGTAAATGATCATGAACTTGAGTTTTA
TAAGATGTCCTGTACAGTAAAGCTATACCTCCAAGGTGTATCTTCGAGTGGATTCTTTCC
TGTCAAGTCTTATCTGCAACTCTGTGTTTGGGGAATGTTGTGTCTGTTGCTGTCTGCCCT
GTGTTGTTAAGGAGAGCAGCGTCACACAAATTCAAACACTCCTGTGACCCGTATTGTAGC
TTGTGCTGTTTCCTTTAGTCTTATTTTAGCCAGTAGACTCCCTCTCCTTCTTGTTGCATT
TCACGGGCCTGGGAGTCCCCCAGCGGAGGGTATTAGAGCCCCTTTGTTATCAATTACATC
TTTGTCTATGTATAATACTTCGTATTGGACATTTTACATGCTGCAAAATTGTGTAGATTT
CTAATACCAAAGACAGAAGTAAATGTTTTTCTGTAGGCTCTGTCTTGCCTGTATGCAGCC
CTGTGTAATATGGTGTAATATGGTGAACTGGAGTGTTATCTCACTTTGTAATATTTTGTA
AATATGTCAATATAATAAATGGTTACTCCTTGCATTAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               108-997, gnl|bosTau2|chr3 (29630294-29631161)
               

               
               108-997, gnl|Hg17|chr1 (107826715-107825822)
               

               
               108-997, gnl|Mm7|chr3 (109503141-109503984)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-997, gnl|bosTau2|chr3 (29630294-29631161)
               

               
               108-997, gnl|Hg17|chr1 (107826715-107825822)
               

               
               108-997, gnl|Mm7|chr3 (109503141-109503984)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               ski (0.29347)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	108-997, gnl\|bosTau2\|chr3 (29630294-29631161)
	108-997, gnl\|Hg17\|chr1 (107826715-107825822)
	108-997, gnl\|Mm7\|chr3 (109503141-109503984)

	lin (0.436808)
	kid (0.389206)
	tra (0.369276)
	ski (0.29347)
	ret (0.257467)
	mgp (0.230681)
	cut (0.169924)
	cki (0.165235)
	bfe (0.149858)
	csk (0.140746)
	pla (0.133672)
	ute (0.132784)
	spc (0.113366)
	eje (0.0988338)