Ss1.1-Pig4-TMW8039C17.3
|
ACGATAGGTCAGAAGTCGTCTATTAAATATAAAGGGGTTAATTTGCCAACAGAGGTAAAA
GGCCAGAGAGCCCTTTTGCAGAACGTTCATTCATTAAATATTTGAGGGAAGACATGATCG
ATGCTAAATGAACCAGAAGCACAGCTCGCTCGCTCTTAAGGGGTAATAGGCAAGAGTTTA
CAGATCACGGAATAGCCTAGAGACTAACGGTTAATGCTTTGTGAGTAGAGAACCAGTGTT
CTACATAATAGACAGATGGCTTCAAAGAGTTGTAAAATTTTAAGTAGAAAATGTAAAGAG
GGCTTTAAAAATTGCCAGGAGAGCAAGTCCGCAGTGCCCAGAGTAGAGCCACAGTAACCG
GGCCACTGTGAGCTGCTGGGAGCATGGCCCGTGGGGTGGGGCCCGTAACCTCCCCCCGAC
CTGCACCCCCTTCTCCCTAAATCCCAGACCTGGCTTCAAGTACCATCCACCTGCCCCCAG
ACCCACCCAGGTTTACCCTATGACCCATCTAAACTGGGCGCTCAGCTTTCCTTCGTGAGC
CCAGCAGTGAGAGGAGAAAATGAATTCTTCCCCTGGAGAGTCGGGGAGCCGTGGCGCGCA
GTGATAGGCACTGAGAGTCTTCGTGGAGGACGAGACGGGGGCCAGGAGGAACCGTGTACC
TCGGGAGGTCGGCGGTCGTTGACAGATGACAAGGAAACATGTGATGAGGTGAAATGAAAC
CACTGCCTTCTCCTCCAGCGCAGAGCTCATCTGCTTCATCTGTTCCTAAATTAGTTCTGG
GGGAAGATCATGAGAAATACTTTTAGGAAAAATGTTTAAAAACATATAGCAAAGCAAAGG
CGAAAAGAAGATAAATCGGGTGTGACTTTTCATGTATTGGTAGCATTAAGAGAACAAGCA
CATTTAAGTATCGTGTGGACTGGAAGTGCACCTGTCATCGTGCGTGGACATGTTTTTGGT
CTTTTTTAACGTGGCTCATCGATGTAGAAGAATTTTGGCCGTGTACCTTCAGTCCCAGAG
AAGATTGTAGATGGTGAGATCGTAGCTGAGCAGCTACTTACATTGAGTGGTCCATTTTCA
ATGTTTTGCACTTAATTAATACGCTAAGTATTTATTTACTCAGCCAGTCATTGCATTAAA
AGTTGCTCTTTTGCATTTTCTTGCCTTGATGTTTGAGTGTAATCTAGCATTTTCATGACG
TGTTTATTTCGCATGACGTTAACCCATTTTAACTAATTTTTTAAAAGCCAGAATGTTATT
ATTATATATTGAAATGTTAACATTTTACTATTTATGGTGTTTACTAGTTCGCAATATTGT
GTAATTAGTCATTATTTCCGGGGAAATATTTTGTTCCTTAGCAGGTGCGTAGATTTAGCT
TCATATCGTTGTAGTATGTTCTTTATTCTCTTTGTGAAGTTAATGCCAGCATATTAAGTG
TACAAACAGATTTAGAAGACAATAAAAAGATCGCATGCTAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACGATAGGTCAGAAGTCGTCTATTAAATATAAAGGGGTTAATTTGCCAACAGAGGTAAAA
GGCCAGAGAGCCCTTTTGCAGAACGTTCATTCATTAAATATTTGAGGGAAGACATGATCG
ATGCTAAATGAACCAGAAGCACAGCTCGCTCGCTCTTAAGGGGTAATAGGCAAGAGTTTA
CAGATCACGGAATAGCCTAGAGACTAACGGTTAATGCTTTGTGAGTAGAGAACCAGTGTT
CTACATAATAGACAGATGGCTTCAAAGAGTTGTAAAATTTTAAGTAGAAAATGTAAAGAG
GGCTTTAAAAATTGCCAGGAGAGCAAGTCCGCAGTGCCCAGAGTAGAGCCACAGTAACCG
GGCCACTGTGAGCTGCTGGGAGCATGGCCCGTGGGGTGGGGCCCGTAACCTCCCCCCGAC
CTGCACCCCCTTCTCCCTAAATCCCAGACCTGGCTTCAAGTACCATCCACCTGCCCCCAG
ACCCACCCAGGTTTACCCTATGACCCATCTAAACTGGGCGCTCAGCTTTCCTTCGTGAGC
CCAGCAGTGAGAGGAGAAAATGAATTCTTCCCCTGGAGAGTCGGGGAGCCGTGGCGCGCA
GTGATAGGCACTGAGAGTCTTCGTGGAGGACGAGACGGGGGCCAGGAGGAACCGTGTACC
TCGGGAGGTCGGCGGTCGTTGACAGATGACAAGGAAACATGTGATGAGGTGAAATGAAAC
CACTGCCTTCTCCTCCAGCGCAGAGCTCATCTGCTTCATCTGTTCCTAAATTAGTTCTGG
GGGAAGATCATGAGAAATACTTTTAGGAAAAATGTTTAAAAACATATAGCAAAGCAAAGG
CGAAAAGAAGATAAATCGGGTGTGACTTTTCATGTATTGGTAGCATTAAGAGAACAAGCA
CATTTAAGTATCGTGTGGACTGGAAGTGCACCTGTCATCGTGCGTGGACATGTTTTTGGT
CTTTTTTAACGTGGCTCATCGATGTAGAAGAATTTTGGCCGTGTACCTTCAGTCCCAGAG
AAGATTGTAGATGGTGAGATCGTAGCTGAGCAGCTACTTACATTGAGTGGTCCATTTTCA
ATGTTTTGCACTTAATTAATACGCTAAGTATTTATTTACTCAGCCAGTCATTGCATTAAA
AGTTGCTCTTTTGCATTTTCTTGCCTTGATGTTTGAGTGTAATCTAGCATTTTCATGACG
TGTTTATTTCGCATGACGTTAACCCATTTTAACTAATTTTTTAAAAGCCAGAATGTTATT
ATTATATATTGAAATGTTAACATTTTACTATTTATGGTGTTTACTAGTTCGCAATATTGT
GTAATTAGTCATTATTTCCGGGGAAATATTTTGTTCCTTAGCAGGTGCGTAGATTTAGCT
TCATATCGTTGTAGTATGTTCTTTATTCTCTTTGTGAAGTTAATGCCAGCATATTAAGTG
TACAAACAGATTTAGAAGACAATAAAAAGATCGCATGCTAAAAAAAAAAAAAAAAAAAAA |
|
3-452, gnl|bosTau2|chr11 (69188108-69187687) |
|
3-452, gnl|Hg17|chr2 (8821148-8820582) |
|
3-452, gnl|Mm7|chr12 (22894612-22895320) |
| |
|
775-1480, gnl|bosTau2|chr11 (69187666-69186960) |
|
775-1480, gnl|canFam2|chr17 (8960143-8960570) |
|
775-1480, gnl|dasNov1|scaffold_3684 (131003-130590) |
|
775-1480, gnl|hg17|chr11 (13471248-13471680) |
|
775-1480, gnl|Hg17|chr2 (8820402-8819657) |
|
775-1480, gnl|loxAfr1|scaffold_3927 (38377-38819) |
|
775-1480, gnl|mm7|chr12 (22895974-22895621) |
|
775-1480, gnl|Mm7|chr12 (22895341-22895973) |
|
775-1480, gnl|oryCun1|scaffold_60058 (1631-2049) |
|
775-1480, gnl|panTro1|chr9 (13737579-13738011) |
|
775-1480, gnl|rheMac2|chr13 (8815636-8816067) |
|
775-1480, gnl|rn3|chr6 (42743215-42742862) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-452, gnl|bosTau2|chr11 (69188108-69187687) |
|
3-452, gnl|Hg17|chr2 (8821148-8820582) |
|
3-452, gnl|Mm7|chr12 (22894612-22895320) |
| |
|
775-1480, gnl|bosTau2|chr11 (69187666-69186960) |
|
775-1480, gnl|canFam2|chr17 (8960143-8960570) |
|
775-1480, gnl|dasNov1|scaffold_3684 (131003-130590) |
|
775-1480, gnl|hg17|chr11 (13471248-13471680) |
|
775-1480, gnl|Hg17|chr2 (8820402-8819657) |
|
775-1480, gnl|loxAfr1|scaffold_3927 (38377-38819) |
|
775-1480, gnl|mm7|chr12 (22895974-22895621) |
|
775-1480, gnl|Mm7|chr12 (22895341-22895973) |
|
775-1480, gnl|oryCun1|scaffold_60058 (1631-2049) |
|
775-1480, gnl|panTro1|chr9 (13737579-13738011) |
|
775-1480, gnl|rheMac2|chr13 (8815636-8816067) |
|
775-1480, gnl|rn3|chr6 (42743215-42742862) |
|
cbe (1.43541) |
|
fco (1.10046) |
|
ret (0.901133) |
|
kid (0.778412) |
|
lin (0.728014) |
|
clu (0.717875) |
|
vin (0.665115) |
|
ski (0.586941) |
|
spc (0.566829) |
|
mgp (0.461361) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
tra (0.369276) |
|
rec (0.346141) |
|
duo (0.345602) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
liv (0.292569) |
|
lyg (0.266205) |
|
thg (0.253582) |
|
bla (0.248694) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
fat (0.147427) |
|
cst (0.140036) |
|
che (0.136314) |
|
ute (0.132784) |
|
ova (0.129132) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
cbe (1.43541) |
|
fco (1.10046) |
|
ret (0.901133) |
|
kid (0.778412) |
|
lin (0.728014) |
|
clu (0.717875) |
|
vin (0.665115) |
|
ski (0.586941) |
|
spc (0.566829) |
|
mgp (0.461361) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
tra (0.369276) |
|
rec (0.346141) |
|
duo (0.345602) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
liv (0.292569) |
|
lyg (0.266205) |
|
thg (0.253582) |
|
bla (0.248694) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
fat (0.147427) |
|
cst (0.140036) |
|
che (0.136314) |
|
ute (0.132784) |
|
ova (0.129132) |
|
eru (0.120048) |
|
ebs (0.118301) |
