Non-Coding RNA Search

Ss1.1-Pig4-TMW8039D02.5

Sequence:


               
               TAATTTATATGTAAATAACAACGCTGTGTTCACATCCCTCTTCTACCTAAAGTTGTCTTT
ATTAGTCTATATTGTATTAAAATTTAGCTCATAAGTATTACTTTTATATTATGTCATTTT
TTTTAAGTTGCATGTTTATACCATTTACTACAGTATTTTTAAGTTTTGGGTGAAGGCCAT
CAGCTGTATGGAGAAGACAGAACAATCACTATTTATTCAGTGTTGCTGCTTTATGTTTCC
CGAATAAGCTTTCGATGCCAGGACAGTGACTGCTTGAAAGCTGCAGGAGCTCTATTCCAA
TGCATTTTATATATTTTTAGAAACCAGATAAATGCAGATAACTATTTAGTATACTCATTA
TATTAAACCAGCAGAAATATAAAGGCAATAAAGTATATACATATATATATATGGGGGGAG
GGGAAAGATTTAAAAATAGATTTACAGCCAGACACAGTGATAGCCCTAAATGTATTTCTC
GGTCTGTCTTTCTTTATTGACCTGAAGAGGATTTGAGTTGCTGCAGCTTTAAACAGAAAA
TTGCCACGTTCACTAACTGTGGACACATAAATATGCTTTTAGTACTGCTTTGCTTATGTG
CAAATAAAATATCTGTAATCTGTATTATATGTAATTATTCTTTGCTTTTGACCTTCATTT
CAAAATGTATATTTTCTGATTATTATCATGAGCTGTAAAACAAAGGATCAATATCTGATA
TTCTCCCAAATAATAAATTTTCAGGATTCACTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTTATATGTAAATAACAACGCTGTGTTCACATCCCTCTTCTACCTAAAGTTGTCTTT
ATTAGTCTATATTGTATTAAAATTTAGCTCATAAGTATTACTTTTATATTATGTCATTTT
TTTTAAGTTGCATGTTTATACCATTTACTACAGTATTTTTAAGTTTTGGGTGAAGGCCAT
CAGCTGTATGGAGAAGACAGAACAATCACTATTTATTCAGTGTTGCTGCTTTATGTTTCC
CGAATAAGCTTTCGATGCCAGGACAGTGACTGCTTGAAAGCTGCAGGAGCTCTATTCCAA
TGCATTTTATATATTTTTAGAAACCAGATAAATGCAGATAACTATTTAGTATACTCATTA
TATTAAACCAGCAGAAATATAAAGGCAATAAAGTATATACATATATATATATGGGGGGAG
GGGAAAGATTTAAAAATAGATTTACAGCCAGACACAGTGATAGCCCTAAATGTATTTCTC
GGTCTGTCTTTCTTTATTGACCTGAAGAGGATTTGAGTTGCTGCAGCTTTAAACAGAAAA
TTGCCACGTTCACTAACTGTGGACACATAAATATGCTTTTAGTACTGCTTTGCTTATGTG
CAAATAAAATATCTGTAATCTGTATTATATGTAATTATTCTTTGCTTTTGACCTTCATTT
CAAAATGTATATTTTCTGATTATTATCATGAGCTGTAAAACAAAGGATCAATATCTGATA
TTCTCCCAAATAATAAATTTTCAGGATTCACTGGGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               223-756, gnl|bosTau2|chr26 (14901097-14900563)
               

               
               223-756, gnl|Hg17|chr12 (26116547-26117067)
               

               
               223-756, gnl|Mm7|chr6 (145911030-145911549)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-756, gnl|bosTau2|chr26 (14901097-14900563)
               

               
               223-756, gnl|Hg17|chr12 (26116547-26117067)
               

               
               223-756, gnl|Mm7|chr6 (145911030-145911549)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

	223-756, gnl\|bosTau2\|chr26 (14901097-14900563)
	223-756, gnl\|Hg17\|chr12 (26116547-26117067)
	223-756, gnl\|Mm7\|chr6 (145911030-145911549)

	ldo (0.194005)
	nlu (0.191681)
	tbr (0.154178)
	lun (0.150489)
	kid (0.129735)