Non-Coding RNA Search

Ss1.1-Pig4-TMW8039D09.3

Sequence:


               
               CGGAAAACCAAGACGCTCATGAAGAAGGATAAGTACACACTGCCCGGAGGGCTGCTGGCC
CCGGGAGGCAACAGCATGGCGAGCGGGGTCGGGGTGGGCGCTGGCCTCGGCGCGGGCGTG
AACCAGCGCATGGACAGCTACGCGCACATGAATGGCTGGAGCAACGGCAGCTACAGCATG
ATGCAGGACCAGCTGGGCTATCCGCAGCACCCGGGCCTCAATGCGCACAGCGCGGCTCAG
ATGCAGCCCATGCACCGCTACGACGTGAGCGCCCTGCAGTACAACTCCATGACCAGCTCG
CAGACCTACATGAACGGCTCGCCCACCTACAGCATGTCCTACTCGCAGCAGGGCACCCCT
GGCATGGCGCTCGGTTCCATGGGCTCAGTGGTCAAGTCCGAGGCGAGCTCCAGCCCCCCC
GTGGTTACCTCTTCTTCCCACTCCAGGGCGCCCTGCCAGGCCGGGGACCTACGGGACATG
ATCAGCATGTACCTCCCCGGCGCTGAGGTGCCAGAGCCCGCCGCCCCCAGCAGACTTCAC
ATGTCCCAGCACTACCAGAGCGGCCCGGTGCCCGGCACGGCCATCAACGGTACACTGCCT
CTCTCTCACATGTGAGGGCCGGACAGTGAACTGGAGGGGGCGGGGGGAGAAAATTTTCAA
AGAAAAAGAGGGAAATGGGAGGAGAGTAAGAAACAGTATGGAGAAAAACCCGGTACGCTT
AAAAAAAAAAAAAATCATCACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAAAACCAAGACGCTCATGAAGAAGGATAAGTACACACTGCCCGGAGGGCTGCTGGCC
CCGGGAGGCAACAGCATGGCGAGCGGGGTCGGGGTGGGCGCTGGCCTCGGCGCGGGCGTG
AACCAGCGCATGGACAGCTACGCGCACATGAATGGCTGGAGCAACGGCAGCTACAGCATG
ATGCAGGACCAGCTGGGCTATCCGCAGCACCCGGGCCTCAATGCGCACAGCGCGGCTCAG
ATGCAGCCCATGCACCGCTACGACGTGAGCGCCCTGCAGTACAACTCCATGACCAGCTCG
CAGACCTACATGAACGGCTCGCCCACCTACAGCATGTCCTACTCGCAGCAGGGCACCCCT
GGCATGGCGCTCGGTTCCATGGGCTCAGTGGTCAAGTCCGAGGCGAGCTCCAGCCCCCCC
GTGGTTACCTCTTCTTCCCACTCCAGGGCGCCCTGCCAGGCCGGGGACCTACGGGACATG
ATCAGCATGTACCTCCCCGGCGCTGAGGTGCCAGAGCCCGCCGCCCCCAGCAGACTTCAC
ATGTCCCAGCACTACCAGAGCGGCCCGGTGCCCGGCACGGCCATCAACGGTACACTGCCT
CTCTCTCACATGTGAGGGCCGGACAGTGAACTGGAGGGGGCGGGGGGAGAAAATTTTCAA
AGAAAAAGAGGGAAATGGGAGGAGAGTAAGAAACAGTATGGAGAAAAACCCGGTACGCTT
AAAAAAAAAAAAAATCATCACCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882611|ref|XP_618064.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882611|ref|XP_618064.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-734, gnl|bosTau2|chr1 (55837757-55838487)
               

               
               1-734, gnl|Hg17|chr3 (182913190-182913929)
               

               
               1-734, gnl|Mm7|chr3 (34458141-34458871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-734, gnl|bosTau2|chr1 (55837757-55838487)
               

               
               1-734, gnl|Hg17|chr3 (182913190-182913929)
               

               
               1-734, gnl|Mm7|chr3 (34458141-34458871)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

	1-734, gnl\|bosTau2\|chr1 (55837757-55838487)
	1-734, gnl\|Hg17\|chr3 (182913190-182913929)
	1-734, gnl\|Mm7\|chr3 (34458141-34458871)