Non-Coding RNA Search

Ss1.1-Pig4-TMW8039D24.3

Sequence:


               
               CTCGCTTCCCTCCATCCTCACTCCCCAGCGCCTCTCTGCCTACTCGGTGCCCCACCTCCT
CCTTCCCCCCTGCTCACACTCCTGAGATCCGAAGAGGAGCTTGGAAAGCTGTAGTATCCG
CTCATTTTCTAAAAATTTTAATTTTTAAACAAAGGAACTTGCCAGGATATCTGCATCAAG
AGTACTGTAGCCTGGGAAACCTCCGAACCACCTGAAATGCATGCTCTATAAATAATAGAA
TCGGCGACATTCTAGTAATGATAGTTTTTACACTGTACTTAATAGGAAGCTTCCAAAAGA
AGAAAACCCCACGTTTTCCATTTTCTTAAAAGTAGGAAAAAAATGAACAATAATTATTAT
GATGAAGATGATAATAATAGTGCTATGGGATGTGTGGACTGTTTTAGTGTGTTCCCCTTT
GTGGCTGGGTTCCTACGATGCTTATTATAGAACACAGTGGATCCTTTTTGAATGTTCGTG
GAAGGGCCAGGAGTTCCTGTGAAACCAGGATACTGCAGCTTTATTAAAGTTAAAGAAACT
GTAACATATCTCTTATATATTAAAAACGTTTAAAAGTTTTAAAGAGAAATTGCATTAATA
CAGATTGAAGTATTTTATTCTTTTTTGACTTGAAAAATTATATTTCATATTGCAAAGATG
TTTACAAGTATTTTAATTTAAGTTCAGTGAACTTTTTTGTAGCTGGGTTAAATCTTTTTA
TTTTAGTATGGCCTTATGGCAAAGAACACTGTATTATTTTAATAATCACACAATTGTGAC
GGAATTACAAACCATAAAATGTGTAATGTTTTGAACAGTATTCTGTTGGGATGGAGATTT
TATAGGTTCAGACAAATCTTCTAGATCTGCTTCACCCAGCATATTTTCTATTCAGTGATA
TAAAGCATATTTTATTCTATATTATTACAAAAAACGGAAATGTATAAACATGTCAAAAGG
AACTGTTGATGCTTTCTAACATTTGTATAAATAGAATTCAGTGCAAGTTACAAAAATTCT
GTTGCACCACTATAGTTTTAGTATTTCTATTTTAATACATTTGTTTACCACTTGTTTATG
TATATGTAGGTGATGTTACTTGAGCTTAAATGTACTTTACTGAGCAAAGTTTAAAAAAAC
AAAGTATATTTTATTTTATGATAAAGGGCCTTTAACCTCATGGTCAAATACTAATATTAT
ATTTGCTGAGACAAGATTTGAAATTGTATCAAGAGTTTTATTTTTCTGACATTTAAAGTT
CTACATAATAAAGGTAAAACTTAAGTAATGGTGCTACTTCATTTTTTAAGTATTTCTATA
TAAATAAAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCTTCCCTCCATCCTCACTCCCCAGCGCCTCTCTGCCTACTCGGTGCCCCACCTCCT
CCTTCCCCCCTGCTCACACTCCTGAGATCCGAAGAGGAGCTTGGAAAGCTGTAGTATCCG
CTCATTTTCTAAAAATTTTAATTTTTAAACAAAGGAACTTGCCAGGATATCTGCATCAAG
AGTACTGTAGCCTGGGAAACCTCCGAACCACCTGAAATGCATGCTCTATAAATAATAGAA
TCGGCGACATTCTAGTAATGATAGTTTTTACACTGTACTTAATAGGAAGCTTCCAAAAGA
AGAAAACCCCACGTTTTCCATTTTCTTAAAAGTAGGAAAAAAATGAACAATAATTATTAT
GATGAAGATGATAATAATAGTGCTATGGGATGTGTGGACTGTTTTAGTGTGTTCCCCTTT
GTGGCTGGGTTCCTACGATGCTTATTATAGAACACAGTGGATCCTTTTTGAATGTTCGTG
GAAGGGCCAGGAGTTCCTGTGAAACCAGGATACTGCAGCTTTATTAAAGTTAAAGAAACT
GTAACATATCTCTTATATATTAAAAACGTTTAAAAGTTTTAAAGAGAAATTGCATTAATA
CAGATTGAAGTATTTTATTCTTTTTTGACTTGAAAAATTATATTTCATATTGCAAAGATG
TTTACAAGTATTTTAATTTAAGTTCAGTGAACTTTTTTGTAGCTGGGTTAAATCTTTTTA
TTTTAGTATGGCCTTATGGCAAAGAACACTGTATTATTTTAATAATCACACAATTGTGAC
GGAATTACAAACCATAAAATGTGTAATGTTTTGAACAGTATTCTGTTGGGATGGAGATTT
TATAGGTTCAGACAAATCTTCTAGATCTGCTTCACCCAGCATATTTTCTATTCAGTGATA
TAAAGCATATTTTATTCTATATTATTACAAAAAACGGAAATGTATAAACATGTCAAAAGG
AACTGTTGATGCTTTCTAACATTTGTATAAATAGAATTCAGTGCAAGTTACAAAAATTCT
GTTGCACCACTATAGTTTTAGTATTTCTATTTTAATACATTTGTTTACCACTTGTTTATG
TATATGTAGGTGATGTTACTTGAGCTTAAATGTACTTTACTGAGCAAAGTTTAAAAAAAC
AAAGTATATTTTATTTTATGATAAAGGGCCTTTAACCTCATGGTCAAATACTAATATTAT
ATTTGCTGAGACAAGATTTGAAATTGTATCAAGAGTTTTATTTTTCTGACATTTAAAGTT
CTACATAATAAAGGTAAAACTTAAGTAATGGTGCTACTTCATTTTTTAAGTATTTCTATA
TAAATAAAATAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               738-855, - strand, RNAz p=0.509839
               

               
               935-1094, - strand, RNAz p=0.914201

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               738-855, - strand, RNAz p=0.509839
               

               
               935-1094, - strand, RNAz p=0.914201

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               924-1041, + strand, RNAmicro p=0.938458

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               924-1041, + strand, RNAmicro p=0.938458

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1332, gnl|bosTau2|chr21 (17658218-17659560)
               

               
               6-1332, gnl|Hg17|chr15 (80122493-80121188)
               

               
               6-1332, gnl|Mm7|chr7 (78791936-78793234)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1332, gnl|bosTau2|chr21 (17658218-17659560)
               

               
               6-1332, gnl|Hg17|chr15 (80122493-80121188)
               

               
               6-1332, gnl|Mm7|chr7 (78791936-78793234)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.314416)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)

	738-855, - strand, RNAz p=0.509839
	935-1094, - strand, RNAz p=0.914201

	6-1332, gnl\|bosTau2\|chr21 (17658218-17659560)
	6-1332, gnl\|Hg17\|chr15 (80122493-80121188)
	6-1332, gnl\|Mm7\|chr7 (78791936-78793234)