Non-Coding RNA Search

Ss1.1-Pig4-TMW8039E01.3

Sequence:


               
               CAACATCTCCTGGGCCTTTGTCTGTGAGAGCAGGGCACGGAGAACGTGACCTGGGGAACC
CCAATACAGCCCCGCCCATACCGGAATTACACGGCATCAACCCTGTGTTCCTGTCCAGCA
ATCCCAGCCGCTGGAGCGTAGAGGAGGTGTACGAGTTTATTGCTTCTCTACAAGGCTGTC
AAGAGATTGCAGAGGAATTTCGTTCCCAGGAGATTGATGGACAGGCCCTTTTATTACTTA
AAGAGGAACATCTTATGAGTGCCATGAACATCAAGCTAGGCCCTGCCCTCAAGATCTGCG
CCAAGATAAATGTCCTCAAGGAGACCTAAGGTGGCCCTCTTGGCACAAACCAGCCTAAGG
CAGACACTCCCCACTGTCCAGGTTATAACCTGGGGCCAGCAGAGACTTCACGGGAAGACA
GAGCTGTTCCAATTCCATCTTCTGTAGAGGGGATTACTGAGACAGGGAAGAGAAGTGCAA
GAATTGGTTGCTGGTGCTATGTGGAGGCAGCTTTGCCATTTCTCTGGGTTCGACTTTATT
TTTTAAATCTTTATGATTCTCACCTACCCTAATCCAGTCTTTATAAAAGAGGCGGTCTAG
AGAGCATGGACTGCTCAGCCTTATCCCAGAGCGGAGTGTCTAGCCAGGGTCTTAGCTCTC
CAGGAGGAGCGATGTACAGTGCGGTTAAGGCGAGGAGGTGGGTGGAATGTAGGCGTGCCT
CAGCAGCAGGGGAGGGAGGGTTTTCTAGCTTGTGTGACACAAGTAGCAAAATCTGGTACT
CTCCCGGCCCCCTGGATTGTCTGACTGTAGCTGTGGCCCAGAATGGTGTCGTCACTCCTG
TAGTATTGAACATTTTCTCCTGCGTCCGTGGCAGGGCCACCAGCCTGCCAGTGTAGAGTC
TGGGTTGGCAGCATTCTGATTCGCTGCAGGGACTAAAAGTGTTTGGCACACATGTGGCTG
TTGTCATTCTTTCTGCACCCCCTGCTCCTGTCCAGTTTATCTACCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACATCTCCTGGGCCTTTGTCTGTGAGAGCAGGGCACGGAGAACGTGACCTGGGGAACC
CCAATACAGCCCCGCCCATACCGGAATTACACGGCATCAACCCTGTGTTCCTGTCCAGCA
ATCCCAGCCGCTGGAGCGTAGAGGAGGTGTACGAGTTTATTGCTTCTCTACAAGGCTGTC
AAGAGATTGCAGAGGAATTTCGTTCCCAGGAGATTGATGGACAGGCCCTTTTATTACTTA
AAGAGGAACATCTTATGAGTGCCATGAACATCAAGCTAGGCCCTGCCCTCAAGATCTGCG
CCAAGATAAATGTCCTCAAGGAGACCTAAGGTGGCCCTCTTGGCACAAACCAGCCTAAGG
CAGACACTCCCCACTGTCCAGGTTATAACCTGGGGCCAGCAGAGACTTCACGGGAAGACA
GAGCTGTTCCAATTCCATCTTCTGTAGAGGGGATTACTGAGACAGGGAAGAGAAGTGCAA
GAATTGGTTGCTGGTGCTATGTGGAGGCAGCTTTGCCATTTCTCTGGGTTCGACTTTATT
TTTTAAATCTTTATGATTCTCACCTACCCTAATCCAGTCTTTATAAAAGAGGCGGTCTAG
AGAGCATGGACTGCTCAGCCTTATCCCAGAGCGGAGTGTCTAGCCAGGGTCTTAGCTCTC
CAGGAGGAGCGATGTACAGTGCGGTTAAGGCGAGGAGGTGGGTGGAATGTAGGCGTGCCT
CAGCAGCAGGGGAGGGAGGGTTTTCTAGCTTGTGTGACACAAGTAGCAAAATCTGGTACT
CTCCCGGCCCCCTGGATTGTCTGACTGTAGCTGTGGCCCAGAATGGTGTCGTCACTCCTG
TAGTATTGAACATTTTCTCCTGCGTCCGTGGCAGGGCCACCAGCCTGCCAGTGTAGAGTC
TGGGTTGGCAGCATTCTGATTCGCTGCAGGGACTAAAAGTGTTTGGCACACATGTGGCTG
TTGTCATTCTTTCTGCACCCCCTGCTCCTGTCCAGTTTATCTACCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UQ30_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UQ30_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               252-411, - strand, RNAz p=0.990313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               252-411, - strand, RNAz p=0.990313

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1002, gnl|bosTau2|chr3 (19092749-19091763)
               

               
               1-1002, gnl|Hg17|chr12 (54092101-54091099)
               

               
               1-1002, gnl|Mm7|chr6 (122345584-122343990)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1002, gnl|bosTau2|chr3 (19092749-19091763)
               

               
               1-1002, gnl|Hg17|chr12 (54092101-54091099)
               

               
               1-1002, gnl|Mm7|chr6 (122345584-122343990)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eye (0.170503)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	1-1002, gnl\|bosTau2\|chr3 (19092749-19091763)
	1-1002, gnl\|Hg17\|chr12 (54092101-54091099)
	1-1002, gnl\|Mm7\|chr6 (122345584-122343990)

	eye (0.170503)
	pty (0.142714)
	lnt (0.142308)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)