Ss1.1-Pig4-TMW8039E16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTGGAGACTTGGAGTGGCGGGATCGCGGCTGCTGCGACAGTGACCGACCTGGGCAACC GAGTCCGGCGCAGTGATGCTGACCCCGGCGTTCGACCTCAGCCAGGACCCCGACTTCCTG ACTATCGCCATCCGCGTGCCCTACGCCCGGGTCTCGGAGTTTGACGTCTACTTCGAGGGG CTCGACTTCAAGTTCTACGCGAAGCCGTACTTTCTCAGATTAACCCTTCCTGGAAGAATT GTAGAAAATGGAAGTGAGCAGGGATCCCATGATGCAGATAAAGGAATTTTTACCATTCGA TTGCCTAAAGAAACTCCTGGCCAGCATTTTGAAGGGCTGAATATGTTAACTGCTCTGCTG GCACCAAGAAAGTCGAGGACTGCAAAACTACTTGTTGAAGAAATAGGTGTTTCTGAGGTT TCTGAGGAAGGAGTAGAAGATGACGATGAAGAGTTTGATTGGGAAATTGAACAGTCCCCC TATGAAGAGGTACCCGAAAGTGCTCTGAATCCAGAGTGCCGCTATGGATTTGGAAACTTA CGATCAGGGGTGTTTCAGCGGTTACAGGATGAATTGAGTGAGGTTATCGATATTAAGGAT CCAGATTTCACTCCTGCAGCTGAACGAAGGCAGAAACGCCTTGCTGCTGAGCTGGCCAAG TTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGATGAGGCAGTTAAACAGGTTTTG GAGTATATTCCTTGGTGGACTGATTTATATTCAAAAATTATGCCCTCTTCAAAAAGGAAT CAGGAGCCAGAAGATTTTACTGCATTAGGGCCACACCCTTGGCATATGGAGATTCCCAGG GGTTTAATTGGAGCTGCAGCCGCTGGCCTGGCCTATGTCAGAGCCACAGCATATGTCAGT GCTGTATCCTTAACCCACTGATCGAGGTTAGGGATCGAACAAGTCAAATTTGTTTCCACT GCACACGAAGGGAACTCCTACCTGAAGCTTTTAATACCTGCCTCGTGTGCTGATGTTGTG ATTGGTGGACATTTGGGCTGTTTACTACTGGTGGGCATTCAGGGTTCTGCACTGGCTTTC TTTGATCACTCATTCTGAAGTAGCTGTTGCATCACAATATTTTGATTTTCTGTATAACAA TGCAGTAGCCTGCTGTTTGCTCTACTTCTGGAGTCTTGTGTAGTGTCTGTTATGTAATAT GTACTCAATAAATATTTATAGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTGGAGACTTGGAGTGGCGGGATCGCGGCTGCTGCGACAGTGACCGACCTGGGCAACC GAGTCCGGCGCAGTGATGCTGACCCCGGCGTTCGACCTCAGCCAGGACCCCGACTTCCTG ACTATCGCCATCCGCGTGCCCTACGCCCGGGTCTCGGAGTTTGACGTCTACTTCGAGGGG CTCGACTTCAAGTTCTACGCGAAGCCGTACTTTCTCAGATTAACCCTTCCTGGAAGAATT GTAGAAAATGGAAGTGAGCAGGGATCCCATGATGCAGATAAAGGAATTTTTACCATTCGA TTGCCTAAAGAAACTCCTGGCCAGCATTTTGAAGGGCTGAATATGTTAACTGCTCTGCTG GCACCAAGAAAGTCGAGGACTGCAAAACTACTTGTTGAAGAAATAGGTGTTTCTGAGGTT TCTGAGGAAGGAGTAGAAGATGACGATGAAGAGTTTGATTGGGAAATTGAACAGTCCCCC TATGAAGAGGTACCCGAAAGTGCTCTGAATCCAGAGTGCCGCTATGGATTTGGAAACTTA CGATCAGGGGTGTTTCAGCGGTTACAGGATGAATTGAGTGAGGTTATCGATATTAAGGAT CCAGATTTCACTCCTGCAGCTGAACGAAGGCAGAAACGCCTTGCTGCTGAGCTGGCCAAG TTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGATGAGGCAGTTAAACAGGTTTTG GAGTATATTCCTTGGTGGACTGATTTATATTCAAAAATTATGCCCTCTTCAAAAAGGAAT CAGGAGCCAGAAGATTTTACTGCATTAGGGCCACACCCTTGGCATATGGAGATTCCCAGG GGTTTAATTGGAGCTGCAGCCGCTGGCCTGGCCTATGTCAGAGCCACAGCATATGTCAGT GCTGTATCCTTAACCCACTGATCGAGGTTAGGGATCGAACAAGTCAAATTTGTTTCCACT GCACACGAAGGGAACTCCTACCTGAAGCTTTTAATACCTGCCTCGTGTGCTGATGTTGTG ATTGGTGGACATTTGGGCTGTTTACTACTGGTGGGCATTCAGGGTTCTGCACTGGCTTTC TTTGATCACTCATTCTGAAGTAGCTGTTGCATCACAATATTTTGATTTTCTGTATAACAA TGCAGTAGCCTGCTGTTTGCTCTACTTCTGGAGTCTTGTGTAGTGTCTGTTATGTAATAT GTACTCAATAAATATTTATAGAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 3-218, gnl|bosTau2|chr22 (20871444-20871659) | |
| 3-218, gnl|Hg17|chr3 (72980252-72980039) | |
| 3-218, gnl|Mm7|chr6 (100761291-100761103) | |
| 364-575, gnl|bosTau2|chr22 (20850227-20850012) | |
| 364-575, gnl|canFam2|chr20 (22316437-22316278) | |
| 364-575, gnl|canFam2|chr20 (22316451-22316169) | |
| 364-575, gnl|dasNov1|scaffold_3683 (84486-84645) | |
| 364-575, gnl|dasNov1|scaffold_3683 (84470-84745) | |
| 364-575, gnl|echTel1|scaffold_319932 (6584-6429) | |
| 364-575, gnl|echTel1|scaffold_319932 (6604-6324) | |
| 364-575, gnl|hg17|chr10 (52060527-52060679) | |
| 364-575, gnl|Hg17|chr3 (72973094-72972874) | |
| 364-575, gnl|hg17|chr5 (62872414-62872689) | |
| 364-575, gnl|mm7|chr6 (100754611-100754770) | |
| 364-575, gnl|mm7|chr6 (100754602-100754878) | |
| 364-575, gnl|Mm7|chr6 (100754828-100754602) | |
| 364-575, gnl|oryCun1|scaffold_145311 (18902-19061) | |
| 364-575, gnl|oryCun1|scaffold_145311 (18890-19172) | |
| 364-575, gnl|panTro1|chr4_random (38990536-38990261) | |
| 364-575, gnl|panTro1|chr8 (52604664-52604512) | |
| 364-575, gnl|rheMac2|chr6 (61346957-61347249) | |
| 364-575, gnl|rheMac2|chr9 (86972682-86972832) | |
| 364-575, gnl|rn3|chr4 (135808175-135808334) | |
| 364-575, gnl|rn3|chr4 (135808166-135808439) | |
| 364-575, gnl|tetNig1|chr11 (10008859-10008720) | |
| 681-809, gnl|bosTau2|chr22 (20835071-20834943) | |
| 681-809, gnl|canFam2|chr20 (22332295-22332171) | |
| 681-809, gnl|dasNov1|scaffold_3683 (58774-58883) | |
| 681-809, gnl|hg17|chr10 (52060296-52060420) | |
| 681-809, gnl|Hg17|chr3 (72956392-72956264) | |
| 681-809, gnl|loxAfr1|scaffold_16048 (25654-25545) | |
| 681-809, gnl|mm7|chr6 (100738352-100738476) | |
| 681-809, gnl|Mm7|chr6 (100738475-100738347) | |
| 681-809, gnl|oryCun1|scaffold_211675 (12083-12206) | |
| 681-809, gnl|panTro1|chr8 (52604895-52604771) | |
| 681-809, gnl|rheMac2|chr9 (86972451-86972575) | |
| 681-809, gnl|rn3|chr4 (135792733-135792857) | |
| 978-1224, gnl|bosTau2|chr22 (20833563-20833297) | |
| 978-1224, gnl|Hg17|chr3 (72955439-72955151) | |
| 978-1224, gnl|Mm7|chr6 (100736939-100736672) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-218, gnl|bosTau2|chr22 (20871444-20871659) | |
| 3-218, gnl|Hg17|chr3 (72980252-72980039) | |
| 3-218, gnl|Mm7|chr6 (100761291-100761103) | |
| 364-575, gnl|bosTau2|chr22 (20850227-20850012) | |
| 364-575, gnl|canFam2|chr20 (22316437-22316278) | |
| 364-575, gnl|canFam2|chr20 (22316451-22316169) | |
| 364-575, gnl|dasNov1|scaffold_3683 (84486-84645) | |
| 364-575, gnl|dasNov1|scaffold_3683 (84470-84745) | |
| 364-575, gnl|echTel1|scaffold_319932 (6584-6429) | |
| 364-575, gnl|echTel1|scaffold_319932 (6604-6324) | |
| 364-575, gnl|hg17|chr10 (52060527-52060679) | |
| 364-575, gnl|Hg17|chr3 (72973094-72972874) | |
| 364-575, gnl|hg17|chr5 (62872414-62872689) | |
| 364-575, gnl|mm7|chr6 (100754611-100754770) | |
| 364-575, gnl|mm7|chr6 (100754602-100754878) | |
| 364-575, gnl|Mm7|chr6 (100754828-100754602) | |
| 364-575, gnl|oryCun1|scaffold_145311 (18902-19061) | |
| 364-575, gnl|oryCun1|scaffold_145311 (18890-19172) | |
| 364-575, gnl|panTro1|chr4_random (38990536-38990261) | |
| 364-575, gnl|panTro1|chr8 (52604664-52604512) | |
| 364-575, gnl|rheMac2|chr6 (61346957-61347249) | |
| 364-575, gnl|rheMac2|chr9 (86972682-86972832) | |
| 364-575, gnl|rn3|chr4 (135808175-135808334) | |
| 364-575, gnl|rn3|chr4 (135808166-135808439) | |
| 364-575, gnl|tetNig1|chr11 (10008859-10008720) | |
| 681-809, gnl|bosTau2|chr22 (20835071-20834943) | |
| 681-809, gnl|canFam2|chr20 (22332295-22332171) | |
| 681-809, gnl|dasNov1|scaffold_3683 (58774-58883) | |
| 681-809, gnl|hg17|chr10 (52060296-52060420) | |
| 681-809, gnl|Hg17|chr3 (72956392-72956264) | |
| 681-809, gnl|loxAfr1|scaffold_16048 (25654-25545) | |
| 681-809, gnl|mm7|chr6 (100738352-100738476) | |
| 681-809, gnl|Mm7|chr6 (100738475-100738347) | |
| 681-809, gnl|oryCun1|scaffold_211675 (12083-12206) | |
| 681-809, gnl|panTro1|chr8 (52604895-52604771) | |
| 681-809, gnl|rheMac2|chr9 (86972451-86972575) | |
| 681-809, gnl|rn3|chr4 (135792733-135792857) | |
| 978-1224, gnl|bosTau2|chr22 (20833563-20833297) | |
| 978-1224, gnl|Hg17|chr3 (72955439-72955151) | |
| 978-1224, gnl|Mm7|chr6 (100736939-100736672) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |