Non-Coding RNA Search

Ss1.1-Pig4-TMW8039E22.3

Sequence:


               
               ATGTGTAAGGTTGCATATTTGAACCATACAGTTTGGGTGTGTATTTGATAGAATATTTGC
CATTGGGTTTGAGTTGTGGTATAATGGAGAACAGCTAGCCACGTGAACAGCAGTTGGATC
TTTGTTCTGATTATTTAGATTTCCTCATGCAAATTCAGAGAAATGCCTTTTAATCACTGA
GTTTACATATCCCAGATCCTTGGAAGTCAAGAAGAAATGACTTGCCAGAATTCTCATCGG
TCCTAAGCAAGTCATGCACTAGAGAGAAGGCAATGCTGGCCATTCATTCTCTGGACTGTT
GGCTGCCTCCCTTGCAGTGCTGGCATCTTTATTACTTGGAGAAGGATGGATGAACTCAAG
CTTTCATGTTAATTGTGTTAAGATGAGTTTTATTCTTCTGCTGACTTGATGTTTTATTTT
GTAAAATAGGAAATGATGTCTTTCCATTTTTCTCTTCATCCTAAAGTGGAAACTTGAGGT
GTTTGTAACATAATATTAGCTTTTTGGAAGACTGCTAGCAAAGAAGAAAAGTAAGAAACT
TATGTATACTCATGAGTATTGGTTTCGTTCCACCAAGCTAATCTTGGAAACATCCGTTGT
AGTGTACATCATTTGAAACATCTGTTGTAGTGTACAAATACTATAGTTTTGTTATAAACT
ATCCTAAAATCACATTTTTGGTCATAATTTCAATATTCTAGGCTTGCCTGACGTGAACAT
ATTTTACTCAGAGACTATGTATAGATACCCAGAAGTGGTGATGAAGATCAATGGTGTAAA
GAATTTATCCTAATTAATGAGAAACTGGACATAATGTCAAAATAGCTATTTTCACAATAA
AATCTGAAATTGCTTGAATATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGTAAGGTTGCATATTTGAACCATACAGTTTGGGTGTGTATTTGATAGAATATTTGC
CATTGGGTTTGAGTTGTGGTATAATGGAGAACAGCTAGCCACGTGAACAGCAGTTGGATC
TTTGTTCTGATTATTTAGATTTCCTCATGCAAATTCAGAGAAATGCCTTTTAATCACTGA
GTTTACATATCCCAGATCCTTGGAAGTCAAGAAGAAATGACTTGCCAGAATTCTCATCGG
TCCTAAGCAAGTCATGCACTAGAGAGAAGGCAATGCTGGCCATTCATTCTCTGGACTGTT
GGCTGCCTCCCTTGCAGTGCTGGCATCTTTATTACTTGGAGAAGGATGGATGAACTCAAG
CTTTCATGTTAATTGTGTTAAGATGAGTTTTATTCTTCTGCTGACTTGATGTTTTATTTT
GTAAAATAGGAAATGATGTCTTTCCATTTTTCTCTTCATCCTAAAGTGGAAACTTGAGGT
GTTTGTAACATAATATTAGCTTTTTGGAAGACTGCTAGCAAAGAAGAAAAGTAAGAAACT
TATGTATACTCATGAGTATTGGTTTCGTTCCACCAAGCTAATCTTGGAAACATCCGTTGT
AGTGTACATCATTTGAAACATCTGTTGTAGTGTACAAATACTATAGTTTTGTTATAAACT
ATCCTAAAATCACATTTTTGGTCATAATTTCAATATTCTAGGCTTGCCTGACGTGAACAT
ATTTTACTCAGAGACTATGTATAGATACCCAGAAGTGGTGATGAAGATCAATGGTGTAAA
GAATTTATCCTAATTAATGAGAAACTGGACATAATGTCAAAATAGCTATTTTCACAATAA
AATCTGAAATTGCTTGAATATTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-864, gnl|bosTau2|chr10 (5131679-5132511)
               

               
               2-864, gnl|Hg17|chr5 (79309148-79308299)
               

               
               2-864, gnl|Mm7|chr13 (89920639-89921368)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-864, gnl|bosTau2|chr10 (5131679-5132511)
               

               
               2-864, gnl|Hg17|chr5 (79309148-79308299)
               

               
               2-864, gnl|Mm7|chr13 (89920639-89921368)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               bfe (0.299715)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	2-864, gnl\|bosTau2\|chr10 (5131679-5132511)
	2-864, gnl\|Hg17\|chr5 (79309148-79308299)
	2-864, gnl\|Mm7\|chr13 (89920639-89921368)

	bfe (0.299715)
	mas (0.210305)
	aor (0.195274)
	col (0.195008)
	fty (0.17584)
	rec (0.17307)
	fco (0.157208)
	fat (0.147427)
	lin (0.145603)
	lyg (0.133103)
	ret (0.128733)
	tra (0.123092)
	spc (0.113366)