Non-Coding RNA Search

Ss1.1-Pig4-TMW8039E22.5

Sequence:


               
               GAGCCATAGTGGGAACTCCCCCTAATTAATTTTTATGTGGATTTTTTTTTTTTAAGTAGG
TGTCATGTGGGATTTGTGTTCTGAGAAATACACTTAGGAAAATGCTGCCCTAGAGTGTTT
CTGCTTGTTTGTGCTCATTGTAAAGGCTTCCAGTTGTTGGCTGCCCCTCTGGTGAGTGGT
GATAAAATGAGAAGAGACAGGTTAGGACTTCCTTGGACCATGGAGTTGACTGAGGAGTGA
CTATTGATTATTTAGGCACATGTGAGGCCTTGGATCAGTCCGGCCCTATTCCCTTGGACC
CAGTTGGCTTGGATCAGCTGTACAGGTCTGTGAACTGCTGATTTCAGAGAACTAACCACT
TAGGCATTTGTGAGATAGAGGGAACCAATTTGGAATTCCAGAACAATTTTCCAGACTGTT
TCTGGCTGTGCCTTAAAAGTGCCAAAAAGGCAGTGGATATTTGTAGCACTAAAGTCATAA
CAAGCTGATTATTTTACACATATATATATGTATACACATATTATGTCATAGAAAGTTTAC
AGTTGCTTCAGTGACAAGAGCAAAGGAAGTTAATTATTTTCAAGTTCTATTACTGAAGAC
ATGGTCTAAAAAAGGATGGTATATTTGTGTGTACATTTTCTAGGAAGAGGGTTTATAGTT
TTTTATTAAATTCTCAGCAGTTTTTATGTACTAAAAAAAGCTTTAAACCTCACTAGACCT
TCAAATTTCAGAGACCGAATATGTTTGATTTCATTTCGAAGTGTGAAACCAGTTCACTAT
CAGGTGTAAAATGCATTTTGTTTTCTGCAATGTGTAAGGTTGCATATTTGAACCATACAG
TTTGGGTGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCATAGTGGGAACTCCCCCTAATTAATTTTTATGTGGATTTTTTTTTTTTAAGTAGG
TGTCATGTGGGATTTGTGTTCTGAGAAATACACTTAGGAAAATGCTGCCCTAGAGTGTTT
CTGCTTGTTTGTGCTCATTGTAAAGGCTTCCAGTTGTTGGCTGCCCCTCTGGTGAGTGGT
GATAAAATGAGAAGAGACAGGTTAGGACTTCCTTGGACCATGGAGTTGACTGAGGAGTGA
CTATTGATTATTTAGGCACATGTGAGGCCTTGGATCAGTCCGGCCCTATTCCCTTGGACC
CAGTTGGCTTGGATCAGCTGTACAGGTCTGTGAACTGCTGATTTCAGAGAACTAACCACT
TAGGCATTTGTGAGATAGAGGGAACCAATTTGGAATTCCAGAACAATTTTCCAGACTGTT
TCTGGCTGTGCCTTAAAAGTGCCAAAAAGGCAGTGGATATTTGTAGCACTAAAGTCATAA
CAAGCTGATTATTTTACACATATATATATGTATACACATATTATGTCATAGAAAGTTTAC
AGTTGCTTCAGTGACAAGAGCAAAGGAAGTTAATTATTTTCAAGTTCTATTACTGAAGAC
ATGGTCTAAAAAAGGATGGTATATTTGTGTGTACATTTTCTAGGAAGAGGGTTTATAGTT
TTTTATTAAATTCTCAGCAGTTTTTATGTACTAAAAAAAGCTTTAAACCTCACTAGACCT
TCAAATTTCAGAGACCGAATATGTTTGATTTCATTTCGAAGTGTGAAACCAGTTCACTAT
CAGGTGTAAAATGCATTTTGTTTTCTGCAATGTGTAAGGTTGCATATTTGAACCATACAG
TTTGGGTGTGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               407-720, - strand, RNAz p=0.999348

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-720, - strand, RNAz p=0.999348

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               409-655, 25629 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW345105.1|), 
blast E-value=3e-23, identity=81.5% 
               

               
               409-655, LB02617.CR_H05 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV886434.1|), 
blast E-value=3e-23, identity=81.5% 
               

               
               409-655, LB02728.CR_I09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV893851.1|), 
blast E-value=7e-27, identity=82.07%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               409-655, 25629 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW345105.1|), 
blast E-value=3e-23, identity=81.5% 
               

               
               409-655, LB02617.CR_H05 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV886434.1|), 
blast E-value=3e-23, identity=81.5% 
               

               
               409-655, LB02728.CR_I09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV893851.1|), 
blast E-value=7e-27, identity=82.07%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               29-830, gnl|bosTau2|chr10 (5130888-5131698)
               

               
               29-830, gnl|Hg17|chr5 (79310012-79309128)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-830, gnl|bosTau2|chr10 (5130888-5131698)
               

               
               29-830, gnl|Hg17|chr5 (79310012-79309128)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	409-655, 25629 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW345105.1\|), blast E-value=3e-23, identity=81.5%
	409-655, LB02617.CR_H05 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV886434.1\|), blast E-value=3e-23, identity=81.5%
	409-655, LB02728.CR_I09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV893851.1\|), blast E-value=7e-27, identity=82.07%

	29-830, gnl\|bosTau2\|chr10 (5130888-5131698)
	29-830, gnl\|Hg17\|chr5 (79310012-79309128)