Ss1.1-Pig4-TMW8039F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTGAGGCGGCACCCGTCAATCCCCGACGCTGTGGGGTCGCTAACTGGGTCCAGAGGT TTTAGGAGGGGTCGCCGGGTGGGTCTGTGGCGAGGCGGGGTAGGCGGCCGGCACCATGTC GAGGCAGGCGAATCGTGGCACCGAGAGCAAGAAAATGAGCTCTGAGCTCTTCACCCTGAC CTATGGGGCTCTGGTCACCCAGCTGTGCAAGGACTATGAAAATGACGAAGATGTGAATAA ACAGCTGGACAAAATGGGCTATAACATTGGAGTCCGACTGATTGAAGATTTCTTGGCACG GTCAAATGTCGGGAGGTGCCATGACTTTCGGGAAACTGCAGATGTCATTGCCAAGGTGGC GTTCAAGATGTATTTGGGCATCACTCCAAGCATCACCAATTGGAGCCCAGCTGGTGACGA ATTCTCCCTCATTTTGGAAAATAATCCCTTGGTGGACTTTGTGGAACTTCCTGATAACCA CTCATCCCTCATTTATTCCAATCTCTTGTGCGGGGTGTTACGAGGCGCCTTGGAGATGGT CCAGATGGCTGTGGAGGCCAAATTTGTCCAGGACACCCTGAAAGGAGATGGTGTGACAGA AATCCGGATGAGGTTCATCAGGCGGATTGAGGACAACCTCCCAGCTGGAGAGGAATGACC AGGACTTCAGGACTTCAGGGGAGCCAGCAGGAGCACTTGGAGTCAGAAAGCCTCAGTGCT CCCTCTGCCCTCTAGGATTCAGTGACTCTTTAACACGGATGTGATATATTCTTCTAACCT TGTCTCCATTCTTCATGCTAATAGAGCAGACTGTGGTATAGTCCATTCACCCTACAAGTG TGCACATTCAGGAGGGAAATTCTTTGCTCCCTTTCCCTTCAGAGGGGCTGGAGGTAGTCA TCTTTGGTTGGACTAGAAAGAGCTCAAACCATTTTACATTCCTGTTTGAATTTTCCGAAG CAGAACCCACTTTGACCCCATTAAGAGGCAAGCCTAGCACATGTATCCCCGGGTCTTCAG AAAGCCATTGGTAAATGGCCTAGGGAGTCCAGGGTCACTGGGATGGGTGGGTAGGAATTG CTGGCTGTCATGTGAGACATTCTAGTGCTCGCAGGGAGAGGGGAGCCAGGCCTGCCAGAA ACACTGACTTCCGGGAAGCCACCCAGGTCTCATTCCTCCCCGCTGTTTGGAGGTGACATC TCCTCTTTTTACAGAGGGTCTATCCTTTTTTCTTACAAGTTCTTCAATAAAGACTTATTG TTGAGTGAAATCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTGAGGCGGCACCCGTCAATCCCCGACGCTGTGGGGTCGCTAACTGGGTCCAGAGGT TTTAGGAGGGGTCGCCGGGTGGGTCTGTGGCGAGGCGGGGTAGGCGGCCGGCACCATGTC GAGGCAGGCGAATCGTGGCACCGAGAGCAAGAAAATGAGCTCTGAGCTCTTCACCCTGAC CTATGGGGCTCTGGTCACCCAGCTGTGCAAGGACTATGAAAATGACGAAGATGTGAATAA ACAGCTGGACAAAATGGGCTATAACATTGGAGTCCGACTGATTGAAGATTTCTTGGCACG GTCAAATGTCGGGAGGTGCCATGACTTTCGGGAAACTGCAGATGTCATTGCCAAGGTGGC GTTCAAGATGTATTTGGGCATCACTCCAAGCATCACCAATTGGAGCCCAGCTGGTGACGA ATTCTCCCTCATTTTGGAAAATAATCCCTTGGTGGACTTTGTGGAACTTCCTGATAACCA CTCATCCCTCATTTATTCCAATCTCTTGTGCGGGGTGTTACGAGGCGCCTTGGAGATGGT CCAGATGGCTGTGGAGGCCAAATTTGTCCAGGACACCCTGAAAGGAGATGGTGTGACAGA AATCCGGATGAGGTTCATCAGGCGGATTGAGGACAACCTCCCAGCTGGAGAGGAATGACC AGGACTTCAGGACTTCAGGGGAGCCAGCAGGAGCACTTGGAGTCAGAAAGCCTCAGTGCT CCCTCTGCCCTCTAGGATTCAGTGACTCTTTAACACGGATGTGATATATTCTTCTAACCT TGTCTCCATTCTTCATGCTAATAGAGCAGACTGTGGTATAGTCCATTCACCCTACAAGTG TGCACATTCAGGAGGGAAATTCTTTGCTCCCTTTCCCTTCAGAGGGGCTGGAGGTAGTCA TCTTTGGTTGGACTAGAAAGAGCTCAAACCATTTTACATTCCTGTTTGAATTTTCCGAAG CAGAACCCACTTTGACCCCATTAAGAGGCAAGCCTAGCACATGTATCCCCGGGTCTTCAG AAAGCCATTGGTAAATGGCCTAGGGAGTCCAGGGTCACTGGGATGGGTGGGTAGGAATTG CTGGCTGTCATGTGAGACATTCTAGTGCTCGCAGGGAGAGGGGAGCCAGGCCTGCCAGAA ACACTGACTTCCGGGAAGCCACCCAGGTCTCATTCCTCCCCGCTGTTTGGAGGTGACATC TCCTCTTTTTACAGAGGGTCTATCCTTTTTTCTTACAAGTTCTTCAATAAAGACTTATTG TTGAGTGAAATCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 538-656, - strand, RNAz p=0.97754 | |
| 1066-1270, + strand, RNAz p=0.959905 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 538-656, - strand, RNAz p=0.97754 | |
| 1066-1270, + strand, RNAz p=0.959905 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_014408, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr3 (76743039-76743197) | |
| 1-157, gnl|Hg17|chr1 (36284190-36284031) | |
| 1-157, gnl|Mm7|chr4 (125707017-125707184) | |
| 256-357, gnl|bosTau2|chr3 (76751892-76751993) | |
| 256-357, gnl|canFam2|chr15 (9091753-9091613) | |
| 256-357, gnl|danRer3|chr19 (68497733-68497869) | |
| 256-357, gnl|dasNov1|scaffold_184195 (1216-1076) | |
| 256-357, gnl|echTel1|scaffold_300119 (5586-5447) | |
| 256-357, gnl|fr1|chrUn (24153353-24153480) | |
| 256-357, gnl|galGal2|chr23 (3622383-3622245) | |
| 256-357, gnl|hg17|chr1 (36274398-36274538) | |
| 256-357, gnl|Hg17|chr1 (36274513-36274412) | |
| 256-357, gnl|loxAfr1|scaffold_30007 (32813-32673) | |
| 256-357, gnl|mm7|chr4 (125717739-125717599) | |
| 256-357, gnl|Mm7|chr4 (125717622-125717723) | |
| 256-357, gnl|monDom2|scaffold_43 (14080499-14080358) | |
| 256-357, gnl|oryCun1|scaffold_203345 (90759-90624) | |
| 256-357, gnl|panTro1|chr1_random (61616557-61616417) | |
| 256-357, gnl|rheMac2|chr1 (38983202-38983342) | |
| 256-357, gnl|rn3|chr5 (145651910-145651771) | |
| 256-357, gnl|tetNig1|chr21 (3193040-3192920) | |
| 256-357, gnl|xenTro1|scaffold_163 (446415-446544) | |
| 538-1270, gnl|bosTau2|chr3 (76753023-76753759) | |
| 538-1270, gnl|Hg17|chr1 (36272017-36271272) | |
| 538-1270, gnl|Mm7|chr4 (125719788-125720525) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr3 (76743039-76743197) | |
| 1-157, gnl|Hg17|chr1 (36284190-36284031) | |
| 1-157, gnl|Mm7|chr4 (125707017-125707184) | |
| 256-357, gnl|bosTau2|chr3 (76751892-76751993) | |
| 256-357, gnl|canFam2|chr15 (9091753-9091613) | |
| 256-357, gnl|danRer3|chr19 (68497733-68497869) | |
| 256-357, gnl|dasNov1|scaffold_184195 (1216-1076) | |
| 256-357, gnl|echTel1|scaffold_300119 (5586-5447) | |
| 256-357, gnl|fr1|chrUn (24153353-24153480) | |
| 256-357, gnl|galGal2|chr23 (3622383-3622245) | |
| 256-357, gnl|hg17|chr1 (36274398-36274538) | |
| 256-357, gnl|Hg17|chr1 (36274513-36274412) | |
| 256-357, gnl|loxAfr1|scaffold_30007 (32813-32673) | |
| 256-357, gnl|mm7|chr4 (125717739-125717599) | |
| 256-357, gnl|Mm7|chr4 (125717622-125717723) | |
| 256-357, gnl|monDom2|scaffold_43 (14080499-14080358) | |
| 256-357, gnl|oryCun1|scaffold_203345 (90759-90624) | |
| 256-357, gnl|panTro1|chr1_random (61616557-61616417) | |
| 256-357, gnl|rheMac2|chr1 (38983202-38983342) | |
| 256-357, gnl|rn3|chr5 (145651910-145651771) | |
| 256-357, gnl|tetNig1|chr21 (3193040-3192920) | |
| 256-357, gnl|xenTro1|scaffold_163 (446415-446544) | |
| 538-1270, gnl|bosTau2|chr3 (76753023-76753759) | |
| 538-1270, gnl|Hg17|chr1 (36272017-36271272) | |
| 538-1270, gnl|Mm7|chr4 (125719788-125720525) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| ebs (0.473205) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| ste (0.270416) | |
| eep (0.245128) | |
| med (0.232504) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| cty (0.20816) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lun (0.150489) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.473205) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| ste (0.270416) | |
| eep (0.245128) | |
| med (0.232504) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| cty (0.20816) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lun (0.150489) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |