Non-Coding RNA Search

Ss1.1-Pig4-TMW8039F09.3

Sequence:


               
               AAAACAAGACCTGGAGAAGTCCTTATTGATTGTTTAGACTCAATTGAAGACACCAAAGGA
AATAATGGGGATAGAGGGAGACTCTTAGTAACAAATTTAAGAATTATCTGGCACTCTTTG
GCATTACCCAGAGTCAATCTTTCTATCGGTTACAACTGCATATTGAATATTACAACAAGA
ACTGCTAATTCTAAATTACGAGGCCAAACTGAAGCTCTTTATATACTAACAAAATGTAAC
AGTACTCGTTTTGAGTTTATATTTACAAATTTGGTTCCTGGAAGTCCTAGACTTTTTACA
TCTGTGATTGCAGTACACAGAGCATATGAAACTTCTAAAATGTATCGTGATTTTAAATTG
AGAAGTGCACTAATTCAAAATAAGCAACTAAGATTATTGCCACAAGAACATGTATACGAT
AAAATCAATGGAGTATGGAATTTATCCAGTGATCAGGGAAATTTAGGAACATTTTTTATT
ACCAATGTGAGAATTGTGTGGCATGCAAATATGAATGACAGTTTTAACGTCAGTATACCG
TATCTGCAAATTAGGTCGATAAAGATTAGAGATTCAAAGTTTGGCTTAGCTCTTGTCATT
GAAAGCTCTCAGCAGAGTGGAGGATATGTTCTTGGCTTTAAAATAGATCCTGTGGAAAAA
CTACAAGAATCAGTTAAGGAAATCAATTCACTTCACAAGGTCTATTCTGCCAGTCCTATA
TTTGGAGTGGATTATGAGATGGAAGAAAAGCCACAGCCCCTCGAAGCTCTGACAGTTGAA
CAAGTTCAAGATGATGTAGAAATAGACTCTGATGATCACACGGATGCTTTTGTGGCTTAT
TTTGCTGATGGCAATAAGCAACAAGATCGTGAACCTGTATTTTCAGAAGAACTGGGGCTT
GCAATAGAGAAATTGAAGGATGGATTCACCCTACAGGGACTTTGGGAAGTAATGAGTTGA
TCTTGAGTTGAACTGGATTTCTGTTTAAAGATACCTCAAGATTAAAGATACTAGTTGCCT
GCTATAAGGCATGGAATAGTTTTTACATTTACAGAAAAAGCTTTTAACAGAGTTTTTTAA
TGATTAAGGAAAAACTCATCGATCTAAAATTTTACTGCCAGTCTTCTAAAAATTGTATTT
GAAATTGTAGTTGAAATTTATCTGGTTCATTGTACATTTTTTTACCCAATACTTGTAAAT
TATTAGTCTGTGGATATTAAAAGATTGATTCATGTCGAGTTTAATAAAGAATTTATGCAG
CTACATTAAATGTTTTGAAAGTATTATCTAATTTAAAAAATAAGACTGTTCTTTTGGAGC
AAAGTACTGCTTTTTTAATTATAAAAATCTGGTTTAGATATATTTATCACATAGCTCCAA
ATGTAAGCCAACTCTAATATAAATTACAAACCTTAAACTTGTCATTTTTATATAATAATT
TCTGTAAAAACTAAAAAGTATAGCTAACTCTGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACAAGACCTGGAGAAGTCCTTATTGATTGTTTAGACTCAATTGAAGACACCAAAGGA
AATAATGGGGATAGAGGGAGACTCTTAGTAACAAATTTAAGAATTATCTGGCACTCTTTG
GCATTACCCAGAGTCAATCTTTCTATCGGTTACAACTGCATATTGAATATTACAACAAGA
ACTGCTAATTCTAAATTACGAGGCCAAACTGAAGCTCTTTATATACTAACAAAATGTAAC
AGTACTCGTTTTGAGTTTATATTTACAAATTTGGTTCCTGGAAGTCCTAGACTTTTTACA
TCTGTGATTGCAGTACACAGAGCATATGAAACTTCTAAAATGTATCGTGATTTTAAATTG
AGAAGTGCACTAATTCAAAATAAGCAACTAAGATTATTGCCACAAGAACATGTATACGAT
AAAATCAATGGAGTATGGAATTTATCCAGTGATCAGGGAAATTTAGGAACATTTTTTATT
ACCAATGTGAGAATTGTGTGGCATGCAAATATGAATGACAGTTTTAACGTCAGTATACCG
TATCTGCAAATTAGGTCGATAAAGATTAGAGATTCAAAGTTTGGCTTAGCTCTTGTCATT
GAAAGCTCTCAGCAGAGTGGAGGATATGTTCTTGGCTTTAAAATAGATCCTGTGGAAAAA
CTACAAGAATCAGTTAAGGAAATCAATTCACTTCACAAGGTCTATTCTGCCAGTCCTATA
TTTGGAGTGGATTATGAGATGGAAGAAAAGCCACAGCCCCTCGAAGCTCTGACAGTTGAA
CAAGTTCAAGATGATGTAGAAATAGACTCTGATGATCACACGGATGCTTTTGTGGCTTAT
TTTGCTGATGGCAATAAGCAACAAGATCGTGAACCTGTATTTTCAGAAGAACTGGGGCTT
GCAATAGAGAAATTGAAGGATGGATTCACCCTACAGGGACTTTGGGAAGTAATGAGTTGA
TCTTGAGTTGAACTGGATTTCTGTTTAAAGATACCTCAAGATTAAAGATACTAGTTGCCT
GCTATAAGGCATGGAATAGTTTTTACATTTACAGAAAAAGCTTTTAACAGAGTTTTTTAA
TGATTAAGGAAAAACTCATCGATCTAAAATTTTACTGCCAGTCTTCTAAAAATTGTATTT
GAAATTGTAGTTGAAATTTATCTGGTTCATTGTACATTTTTTTACCCAATACTTGTAAAT
TATTAGTCTGTGGATATTAAAAGATTGATTCATGTCGAGTTTAATAAAGAATTTATGCAG
CTACATTAAATGTTTTGAAAGTATTATCTAATTTAAAAAATAAGACTGTTCTTTTGGAGC
AAAGTACTGCTTTTTTAATTATAAAAATCTGGTTTAGATATATTTATCACATAGCTCCAA
ATGTAAGCCAACTCTAATATAAATTACAAACCTTAAACTTGTCATTTTTATATAATAATT
TCTGTAAAAACTAAAAAGTATAGCTAACTCTGGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61856974|ref|XP_606603.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856974|ref|XP_606603.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               593-750, + strand, RNAz p=0.889971

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               593-750, + strand, RNAz p=0.889971

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               319-457, gnl|bosTau2|chr2 (20339215-20339077)
               

               
               319-457, gnl|Hg17|chr2 (170174889-170175027)
               

               
               319-457, gnl|Mm7|chr2 (69586046-69586184)
               


               
               593-750, gnl|bosTau2|chr2 (20332643-20332487)
               

               
               593-750, gnl|Hg17|chr2 (170181479-170181637)
               

               
               593-750, gnl|Mm7|chr2 (69593553-69593709)
               


               
               856-1475, gnl|bosTau2|chr2 (20327257-20326636)
               

               
               856-1475, gnl|Hg17|chr2 (170186495-170189173)
               

               
               856-1475, gnl|Mm7|chr2 (69597650-69598536)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               319-457, gnl|bosTau2|chr2 (20339215-20339077)
               

               
               319-457, gnl|Hg17|chr2 (170174889-170175027)
               

               
               319-457, gnl|Mm7|chr2 (69586046-69586184)
               


               
               593-750, gnl|bosTau2|chr2 (20332643-20332487)
               

               
               593-750, gnl|Hg17|chr2 (170181479-170181637)
               

               
               593-750, gnl|Mm7|chr2 (69593553-69593709)
               


               
               856-1475, gnl|bosTau2|chr2 (20327257-20326636)
               

               
               856-1475, gnl|Hg17|chr2 (170186495-170189173)
               

               
               856-1475, gnl|Mm7|chr2 (69597650-69598536)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ste (0.405625)
               

               
               tra (0.369276)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               tra (0.369276)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

	319-457, gnl\|bosTau2\|chr2 (20339215-20339077)
	319-457, gnl\|Hg17\|chr2 (170174889-170175027)
	319-457, gnl\|Mm7\|chr2 (69586046-69586184)

	593-750, gnl\|bosTau2\|chr2 (20332643-20332487)
	593-750, gnl\|Hg17\|chr2 (170181479-170181637)
	593-750, gnl\|Mm7\|chr2 (69593553-69593709)

	856-1475, gnl\|bosTau2\|chr2 (20327257-20326636)
	856-1475, gnl\|Hg17\|chr2 (170186495-170189173)
	856-1475, gnl\|Mm7\|chr2 (69597650-69598536)

	ste (0.405625)
	tra (0.369276)
	kid (0.259471)
	mgp (0.230681)
	ova (0.129132)
	ret (0.128733)
	cty (0.10408)