Non-Coding RNA Search

Ss1.1-Pig4-TMW8039F10.5

Sequence:


               
               GGGGAACAAAGACTGGTGAAGACGCTATGGAGAATTCTCTCTTCCAGTCCCAATCCCCCA
GGGGGTGCTGGAACGGGGGGCCGGGGGAGGCAGAAGGCGGCAGAAGGCCGGTTTACGTAG
GATTAGCTTCCAGGTGGCTGCCGATTTCAGCACAAGCACTACTGAAATTCACATAAAAAA
GAGAAAGCTGTGAAATTGAGGTCCCGCTTTAAGAGGCCCGGGCCGAGCGCGCGGGCCCGC
GGAGCTCCCGAGGAGGAGGGCCTGCCGGGGCCGGCGGGAGCGCATTGGCCCCAGCTGCGC
CCGGGGCCCACGCCGAGCCCTTCCCGGGGCCGCCGGCCAGATAACCTGCCGCGGGGCTGC
TGGCAGGACCTCGCCGCAGCGCCTCTTCTCCGCTGGAGCTGTCGCCTGGCGTGTCTGTGC
AGATCCTGCTGCCATGTGTGACCCGAGGTAGGAGGCCCGTGGGGGCAGCGGGCCCTGGCG
ACACGCAAGGGGGAGGTTCGGGTGCGAGTCTCCGGAGCAGGGGCGCGGGTCCGTGGTCGC
CTCTTCCCCGGGCTGCGCTGCGCCTGGACCTGTGCGAAGGCGCCGCCGCCGGATTCCAGT
TTCGTGTGTTTCCCTCTCTCGCTCCGTATTTATTTTTTTAATTTTTGGAGGCGGTGCACA
TTTCAGGAGTGGTTGGGGACTAAGGAAAGAACTCTCTAGTTCCATCAAGGTGAAGCCTGG
CGGGGTCTCCTCCCTCCCTTGCACTGGTCATCAGTATTGTGTAAAGGAACTGATATACTT
GAGTGTGCAAGCAATGAACCCATTTGACATGCTGCTATGAAGACTACTTTTAGAACAACA
GTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAACAAAGACTGGTGAAGACGCTATGGAGAATTCTCTCTTCCAGTCCCAATCCCCCA
GGGGGTGCTGGAACGGGGGGCCGGGGGAGGCAGAAGGCGGCAGAAGGCCGGTTTACGTAG
GATTAGCTTCCAGGTGGCTGCCGATTTCAGCACAAGCACTACTGAAATTCACATAAAAAA
GAGAAAGCTGTGAAATTGAGGTCCCGCTTTAAGAGGCCCGGGCCGAGCGCGCGGGCCCGC
GGAGCTCCCGAGGAGGAGGGCCTGCCGGGGCCGGCGGGAGCGCATTGGCCCCAGCTGCGC
CCGGGGCCCACGCCGAGCCCTTCCCGGGGCCGCCGGCCAGATAACCTGCCGCGGGGCTGC
TGGCAGGACCTCGCCGCAGCGCCTCTTCTCCGCTGGAGCTGTCGCCTGGCGTGTCTGTGC
AGATCCTGCTGCCATGTGTGACCCGAGGTAGGAGGCCCGTGGGGGCAGCGGGCCCTGGCG
ACACGCAAGGGGGAGGTTCGGGTGCGAGTCTCCGGAGCAGGGGCGCGGGTCCGTGGTCGC
CTCTTCCCCGGGCTGCGCTGCGCCTGGACCTGTGCGAAGGCGCCGCCGCCGGATTCCAGT
TTCGTGTGTTTCCCTCTCTCGCTCCGTATTTATTTTTTTAATTTTTGGAGGCGGTGCACA
TTTCAGGAGTGGTTGGGGACTAAGGAAAGAACTCTCTAGTTCCATCAAGGTGAAGCCTGG
CGGGGTCTCCTCCCTCCCTTGCACTGGTCATCAGTATTGTGTAAAGGAACTGATATACTT
GAGTGTGCAAGCAATGAACCCATTTGACATGCTGCTATGAAGACTACTTTTAGAACAACA
GTAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-380, gnl|bosTau2|chr19 (12592965-12593336)
               

               
               1-380, gnl|canFam2|chr9 (43821948-43820972)
               

               
               1-380, gnl|dasNov1|scaffold_62588 (5593-6539)
               

               
               1-380, gnl|echTel1|scaffold_289635 (44850-43905)
               

               
               1-380, gnl|hg17|chr17 (27840791-27841766)
               

               
               1-380, gnl|Hg17|chr17 (27840976-27841340)
               

               
               1-380, gnl|mm7|chr11 (80561069-80562057)
               

               
               1-380, gnl|Mm7|chr11 (80561265-80561647)
               

               
               1-380, gnl|monDom2|scaffold_44 (11317590-11316496)
               

               
               1-380, gnl|oryCun1|scaffold_204815 (161026-160216)
               

               
               1-380, gnl|panTro1|chr19 (31361983-31362958)
               

               
               1-380, gnl|rheMac2|chr16 (27821769-27822750)
               

               
               1-380, gnl|rn3|chr10 (68731635-68732602)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr19 (12592965-12593336)
               

               
               1-380, gnl|canFam2|chr9 (43821948-43820972)
               

               
               1-380, gnl|dasNov1|scaffold_62588 (5593-6539)
               

               
               1-380, gnl|echTel1|scaffold_289635 (44850-43905)
               

               
               1-380, gnl|hg17|chr17 (27840791-27841766)
               

               
               1-380, gnl|Hg17|chr17 (27840976-27841340)
               

               
               1-380, gnl|mm7|chr11 (80561069-80562057)
               

               
               1-380, gnl|Mm7|chr11 (80561265-80561647)
               

               
               1-380, gnl|monDom2|scaffold_44 (11317590-11316496)
               

               
               1-380, gnl|oryCun1|scaffold_204815 (161026-160216)
               

               
               1-380, gnl|panTro1|chr19 (31361983-31362958)
               

               
               1-380, gnl|rheMac2|chr16 (27821769-27822750)
               

               
               1-380, gnl|rn3|chr10 (68731635-68732602)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               ebs (0.118301)

	1-380, gnl\|bosTau2\|chr19 (12592965-12593336)
	1-380, gnl\|canFam2\|chr9 (43821948-43820972)
	1-380, gnl\|dasNov1\|scaffold_62588 (5593-6539)
	1-380, gnl\|echTel1\|scaffold_289635 (44850-43905)
	1-380, gnl\|hg17\|chr17 (27840791-27841766)
	1-380, gnl\|Hg17\|chr17 (27840976-27841340)
	1-380, gnl\|mm7\|chr11 (80561069-80562057)
	1-380, gnl\|Mm7\|chr11 (80561265-80561647)
	1-380, gnl\|monDom2\|scaffold_44 (11317590-11316496)
	1-380, gnl\|oryCun1\|scaffold_204815 (161026-160216)
	1-380, gnl\|panTro1\|chr19 (31361983-31362958)
	1-380, gnl\|rheMac2\|chr16 (27821769-27822750)
	1-380, gnl\|rn3\|chr10 (68731635-68732602)