Non-Coding RNA Search

Ss1.1-Pig4-TMW8039F12.3

Sequence:


               
               TGATATACGGTAGTGAAAGATCCAGCAATTTACCTAATTAGCCAATGCATGGAGCCAAAC
CCCACCATTCTGAAGAATGTGTGCTTACTTGATATGGTAGCAGAGAGAAAACAAGTAGTT
TGAGGAAGTAATTTTTTTTTTTTTTAATGTATTTTTTCGGCCACTCCTGCACCATGCAGA
AGTTCAAAGGCCAGGGATCAAACCCTCACCACATCAGTGACAGCATTGCATCCTTAACCC
AATAGGCCATCAGGGAACTCCCAAGGAAGTAGGTTTTAAATCAGAGTTTATAAACAGCAA
TGGGAGGGATTCAGCTTAACTATGGAATTTTTAGACTGTGTTCCCTTGCATTTAAGTCAG
ATTGTAATGAAAAAGCCCCAGCCATTGCTTATGTCAAATTTCTCCAGTTGTGTAGTGATT
CTTGAAATCATCATTAAGAATAATCAAGCAGAAAGAAAGAAACACTTTGTATTAAAGCAG
GCTTGGCTTTCATGAAAAATTAATTGTTCAAAGGTTAATGTTAAGGATTCAAGCTCACTG
AAAGTGTAATATTGGAAATGTGGAAAGTATGGTGGGTAAAGGAAACTACCTCATTCTTTG
AAGGTTCTATAGAAGCACAATTAAGCATTCTAAAATGGCTTTGTTACACATGAACCATCT
GTGTGAAAGAACTCTATATTTGTAATGTCTAAAGGACTTGGAATAGTTGTATTTTGCTGG
CAATAGACACGTGCTTTATTGTTTGCAGGTTCCTCATCAAATCTTTAATTATACACTGTT
TCTGTCATCAATAAAACAATTTAAAGGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATATACGGTAGTGAAAGATCCAGCAATTTACCTAATTAGCCAATGCATGGAGCCAAAC
CCCACCATTCTGAAGAATGTGTGCTTACTTGATATGGTAGCAGAGAGAAAACAAGTAGTT
TGAGGAAGTAATTTTTTTTTTTTTTAATGTATTTTTTCGGCCACTCCTGCACCATGCAGA
AGTTCAAAGGCCAGGGATCAAACCCTCACCACATCAGTGACAGCATTGCATCCTTAACCC
AATAGGCCATCAGGGAACTCCCAAGGAAGTAGGTTTTAAATCAGAGTTTATAAACAGCAA
TGGGAGGGATTCAGCTTAACTATGGAATTTTTAGACTGTGTTCCCTTGCATTTAAGTCAG
ATTGTAATGAAAAAGCCCCAGCCATTGCTTATGTCAAATTTCTCCAGTTGTGTAGTGATT
CTTGAAATCATCATTAAGAATAATCAAGCAGAAAGAAAGAAACACTTTGTATTAAAGCAG
GCTTGGCTTTCATGAAAAATTAATTGTTCAAAGGTTAATGTTAAGGATTCAAGCTCACTG
AAAGTGTAATATTGGAAATGTGGAAAGTATGGTGGGTAAAGGAAACTACCTCATTCTTTG
AAGGTTCTATAGAAGCACAATTAAGCATTCTAAAATGGCTTTGTTACACATGAACCATCT
GTGTGAAAGAACTCTATATTTGTAATGTCTAAAGGACTTGGAATAGTTGTATTTTGCTGG
CAATAGACACGTGCTTTATTGTTTGCAGGTTCCTCATCAAATCTTTAATTATACACTGTT
TCTGTCATCAATAAAACAATTTAAAGGAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               265-808, gnl|bosTau2|chr5 (52092198-52092714)
               

               
               265-808, gnl|Hg17|chr12 (24856094-24855570)
               

               
               265-808, gnl|Mm7|chr6 (145085136-145084699)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-808, gnl|bosTau2|chr5 (52092198-52092714)
               

               
               265-808, gnl|Hg17|chr12 (24856094-24855570)
               

               
               265-808, gnl|Mm7|chr6 (145085136-145084699)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               hyp (0.285673)
               

               
               pan (0.23596)
               

               
               sag (0.182715)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               pan (0.23596)
               

               
               sag (0.182715)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	265-808, gnl\|bosTau2\|chr5 (52092198-52092714)
	265-808, gnl\|Hg17\|chr12 (24856094-24855570)
	265-808, gnl\|Mm7\|chr6 (145085136-145084699)

	hyp (0.285673)
	pan (0.23596)
	sag (0.182715)
	lnt (0.142308)
	ova (0.129132)
	eru (0.120048)
	jca (0.11396)