Ss1.1-Pig4-TMW8039F16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTGGAGAGTAGAATGTCTGATGTTGTTAAAGGAGTCTACAAAGATAAGGATAATGAAG AGTTGAGAGTGATTTGCCCAGTGCCTGCAGAGGATGAACAGACAGACTGCACCTCTGCCC AGCAACTCAGTACAAGTACCAGTCCTCCATGTGCAGCTGAGCTTTCTGCATTAAGCACAA CTCAGCAAGAAAAGGATCTAATAGAGGATTCTGCTGTTCAGAAGGATGTTCCCAACCAGA CAACTATACCAGCTTCTTCCCCGAGTACTGCAAAGCCATCAAGAACAAGCACTGCTTCGT CATGTCATAGTAACGTAAATGCAGCTGCAGCTGTGGCCCTCCAGGAACCCCGAAAGCTAA GTTACGCTGAAGTGTGCCAGAAGCCCCCTAAGGAGCCATCTCCAGTCCTTGTGCAGCCAC TACGAGAACTTCGCTCCAATGCAGTATCTCCCACCAAAAATGAAGAGAACGGAGCTGCTG AGAAGTCCACTGAGAAATCAAATGAGAAGCCAGAAGCAAGGGCTAGTAAGGATTACTCTG GCTTCCGAGGCAATGCCATTCCTAGGGGAACAGCTGGAAAAATCAGGGAACAGAGACGCC AGTTTGGCCATAGGGCTATACCTCAGGGAGTGACTCGACGTAATGGCAAAGAGCAATATG TGCCACCCAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTGGAGAGTAGAATGTCTGATGTTGTTAAAGGAGTCTACAAAGATAAGGATAATGAAG AGTTGAGAGTGATTTGCCCAGTGCCTGCAGAGGATGAACAGACAGACTGCACCTCTGCCC AGCAACTCAGTACAAGTACCAGTCCTCCATGTGCAGCTGAGCTTTCTGCATTAAGCACAA CTCAGCAAGAAAAGGATCTAATAGAGGATTCTGCTGTTCAGAAGGATGTTCCCAACCAGA CAACTATACCAGCTTCTTCCCCGAGTACTGCAAAGCCATCAAGAACAAGCACTGCTTCGT CATGTCATAGTAACGTAAATGCAGCTGCAGCTGTGGCCCTCCAGGAACCCCGAAAGCTAA GTTACGCTGAAGTGTGCCAGAAGCCCCCTAAGGAGCCATCTCCAGTCCTTGTGCAGCCAC TACGAGAACTTCGCTCCAATGCAGTATCTCCCACCAAAAATGAAGAGAACGGAGCTGCTG AGAAGTCCACTGAGAAATCAAATGAGAAGCCAGAAGCAAGGGCTAGTAAGGATTACTCTG GCTTCCGAGGCAATGCCATTCCTAGGGGAACAGCTGGAAAAATCAGGGAACAGAGACGCC AGTTTGGCCATAGGGCTATACCTCAGGGAGTGACTCGACGTAATGGCAAAGAGCAATATG TGCCACCCAGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 462-621, + strand, RNAz p=0.974649 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 462-621, + strand, RNAz p=0.974649 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 47-175, gnl|bosTau2|chr5 (22756367-22756239) | |
| 47-175, gnl|canFam2|chr27 (7264599-7264442) | |
| 47-175, gnl|dasNov1|scaffold_45631 (8013-8162) | |
| 47-175, gnl|echTel1|scaffold_320822 (241-396) | |
| 47-175, gnl|galGal2|chrUn (6292433-6292264) | |
| 47-175, gnl|hg17|chr12 (49153440-49153595) | |
| 47-175, gnl|Hg17|chr12 (49153461-49153586) | |
| 47-175, gnl|loxAfr1|scaffold_9898 (7063-7219) | |
| 47-175, gnl|mm7|chr15 (99992838-99992979) | |
| 47-175, gnl|Mm7|chr15 (99992848-99992973) | |
| 47-175, gnl|oryCun1|scaffold_206379 (12272-12147) | |
| 47-175, gnl|panTro1|chr10_random (20741236-20741081) | |
| 47-175, gnl|rheMac2|chr11 (47621436-47621591) | |
| 47-175, gnl|rn3|chr18 (37532095-37531968) | |
| 343-672, gnl|bosTau2|chr5 (22755025-22754696) | |
| 343-672, gnl|canFam2|chr27 (7262299-7262756) | |
| 343-672, gnl|canFam2|chr27 (7262773-7262410) | |
| 343-672, gnl|canFam2|chr27 (7262430-7262756) | |
| 343-672, gnl|danRer3|chr6 (20703853-20704229) | |
| 343-672, gnl|dasNov1|scaffold_37415 (7610-8089) | |
| 343-672, gnl|dasNov1|scaffold_37415 (7754-8089) | |
| 343-672, gnl|dasNov1|scaffold_45631 (9505-9880) | |
| 343-672, gnl|echTel1|scaffold_320822 (2451-2007) | |
| 343-672, gnl|echTel1|scaffold_320822 (1990-2352) | |
| 343-672, gnl|echTel1|scaffold_320822 (2336-2007) | |
| 343-672, gnl|fr1|chrUn (41705894-41705465) | |
| 343-672, gnl|galGal2|chrUn (6291248-6291650) | |
| 343-672, gnl|galGal2|chrUn (6291668-6291320) | |
| 343-672, gnl|galGal2|chrUn (6291331-6291650) | |
| 343-672, gnl|hg17|chr1 (218773206-218773674) | |
| 343-672, gnl|hg17|chr12 (49155575-49155938) | |
| 343-672, gnl|Hg17|chr12 (49155574-49155903) | |
| 343-672, gnl|hg17|chr1_random (1645300-1645623) | |
| 343-672, gnl|loxAfr1|scaffold_9898 (9138-8679) | |
| 343-672, gnl|loxAfr1|scaffold_9898 (8662-9027) | |
| 343-672, gnl|loxAfr1|scaffold_9898 (9002-8679) | |
| 343-672, gnl|mm7|chr15 (99997549-99997097) | |
| 343-672, gnl|mm7|chr15 (99997080-99997449) | |
| 343-672, gnl|mm7|chr15 (99997423-99997097) | |
| 343-672, gnl|Mm7|chr15 (99997079-99997408) | |
| 343-672, gnl|oryCun1|scaffold_206379 (11484-11960) | |
| 343-672, gnl|oryCun1|scaffold_206379 (11977-11593) | |
| 343-672, gnl|oryCun1|scaffold_206379 (11634-11960) | |
| 343-672, gnl|panTro1|chr1 (202525274-202525741) | |
| 343-672, gnl|panTro1|chr1 (202525418-202525741) | |
| 343-672, gnl|panTro1|chr10_random (20674974-20675337) | |
| 343-672, gnl|rheMac2|chr1 (148040414-148039949) | |
| 343-672, gnl|rheMac2|chr1 (148040271-148039949) | |
| 343-672, gnl|rheMac2|chr11 (47624140-47624503) | |
| 343-672, gnl|rn3|chr18 (37531325-37531774) | |
| 343-672, gnl|rn3|chr18 (37531791-37531421) | |
| 343-672, gnl|rn3|chr18 (37531447-37531774) | |
| 343-672, gnl|tetNig1|chr9 (3260778-3261197) | |
| 343-672, gnl|xenTro1|scaffold_34 (485458-485014) | |
| 343-672, gnl|xenTro1|scaffold_34 (484997-485355) | |
| 343-672, gnl|xenTro1|scaffold_34 (485343-485014) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-175, gnl|bosTau2|chr5 (22756367-22756239) | |
| 47-175, gnl|canFam2|chr27 (7264599-7264442) | |
| 47-175, gnl|dasNov1|scaffold_45631 (8013-8162) | |
| 47-175, gnl|echTel1|scaffold_320822 (241-396) | |
| 47-175, gnl|galGal2|chrUn (6292433-6292264) | |
| 47-175, gnl|hg17|chr12 (49153440-49153595) | |
| 47-175, gnl|Hg17|chr12 (49153461-49153586) | |
| 47-175, gnl|loxAfr1|scaffold_9898 (7063-7219) | |
| 47-175, gnl|mm7|chr15 (99992838-99992979) | |
| 47-175, gnl|Mm7|chr15 (99992848-99992973) | |
| 47-175, gnl|oryCun1|scaffold_206379 (12272-12147) | |
| 47-175, gnl|panTro1|chr10_random (20741236-20741081) | |
| 47-175, gnl|rheMac2|chr11 (47621436-47621591) | |
| 47-175, gnl|rn3|chr18 (37532095-37531968) | |
| 343-672, gnl|bosTau2|chr5 (22755025-22754696) | |
| 343-672, gnl|canFam2|chr27 (7262299-7262756) | |
| 343-672, gnl|canFam2|chr27 (7262773-7262410) | |
| 343-672, gnl|canFam2|chr27 (7262430-7262756) | |
| 343-672, gnl|danRer3|chr6 (20703853-20704229) | |
| 343-672, gnl|dasNov1|scaffold_37415 (7610-8089) | |
| 343-672, gnl|dasNov1|scaffold_37415 (7754-8089) | |
| 343-672, gnl|dasNov1|scaffold_45631 (9505-9880) | |
| 343-672, gnl|echTel1|scaffold_320822 (2451-2007) | |
| 343-672, gnl|echTel1|scaffold_320822 (1990-2352) | |
| 343-672, gnl|echTel1|scaffold_320822 (2336-2007) | |
| 343-672, gnl|fr1|chrUn (41705894-41705465) | |
| 343-672, gnl|galGal2|chrUn (6291248-6291650) | |
| 343-672, gnl|galGal2|chrUn (6291668-6291320) | |
| 343-672, gnl|galGal2|chrUn (6291331-6291650) | |
| 343-672, gnl|hg17|chr1 (218773206-218773674) | |
| 343-672, gnl|hg17|chr12 (49155575-49155938) | |
| 343-672, gnl|Hg17|chr12 (49155574-49155903) | |
| 343-672, gnl|hg17|chr1_random (1645300-1645623) | |
| 343-672, gnl|loxAfr1|scaffold_9898 (9138-8679) | |
| 343-672, gnl|loxAfr1|scaffold_9898 (8662-9027) | |
| 343-672, gnl|loxAfr1|scaffold_9898 (9002-8679) | |
| 343-672, gnl|mm7|chr15 (99997549-99997097) | |
| 343-672, gnl|mm7|chr15 (99997080-99997449) | |
| 343-672, gnl|mm7|chr15 (99997423-99997097) | |
| 343-672, gnl|Mm7|chr15 (99997079-99997408) | |
| 343-672, gnl|oryCun1|scaffold_206379 (11484-11960) | |
| 343-672, gnl|oryCun1|scaffold_206379 (11977-11593) | |
| 343-672, gnl|oryCun1|scaffold_206379 (11634-11960) | |
| 343-672, gnl|panTro1|chr1 (202525274-202525741) | |
| 343-672, gnl|panTro1|chr1 (202525418-202525741) | |
| 343-672, gnl|panTro1|chr10_random (20674974-20675337) | |
| 343-672, gnl|rheMac2|chr1 (148040414-148039949) | |
| 343-672, gnl|rheMac2|chr1 (148040271-148039949) | |
| 343-672, gnl|rheMac2|chr11 (47624140-47624503) | |
| 343-672, gnl|rn3|chr18 (37531325-37531774) | |
| 343-672, gnl|rn3|chr18 (37531791-37531421) | |
| 343-672, gnl|rn3|chr18 (37531447-37531774) | |
| 343-672, gnl|tetNig1|chr9 (3260778-3261197) | |
| 343-672, gnl|xenTro1|scaffold_34 (485458-485014) | |
| 343-672, gnl|xenTro1|scaffold_34 (484997-485355) | |
| 343-672, gnl|xenTro1|scaffold_34 (485343-485014) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |