Ss1.1-Pig4-TMW8039F18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCTGGAAACGTCTGCCCAGTCAGAAGCCAAATGGACCGCACAGATCGCCGAACTGGAG AAGGAGCGGGGCAGCCTGGTGAACGCCGTGGCTCGCCAGGAGGAACAGTTGTCTGCTCTT CAGGAGCAGCTGGAATACACCCAGCTCAAACTGTCCAGCACTCAGGAATCTATATGCCAG CTCGCGAAGGACCAGCGAAAAATACTCCTGGCGGAGTCACGGAGGGCTGCGGAGCAGGTG GTGCAGGAGGCGCTGAGGCAGTTCGAGGAGCCCACTCTCTTCAGCTGCGCTGGATCCGCA GATCACCTACTCTGCAAGGTCAGGTCCGTTTCCAGCTGCATTGAGCAACTGGAACAATGC TGGAGCCAGTATCTGGCCTGCCCGGAAGATATCAGTGGGCTCCTCCATGCCGTCACCCTC CTGGCCCACTTGACCAGTGACACCATTGTTCACGGCAGCACCACCTGCCTCAGGGCCCCG CCGGAGCCTGCCGACTCATTGACCGAGGCCTGTAAGCAGTACGGCAGGGAGACCCTCATC TATCTGGGCTTCCTGGAGGAAGAAGGAATCCTCGAGAAGGCCGACAGCACCGCCGTGAGG AGCTGCCTCACCAGGATCACAGCCATTGGCGAGGAGCTCCTGCCCAGAGGCCTGGACATC AAACAGGAGGAGCTGGGGGACCTGGTGGACAAGGAGCTGGCTGCCACTTCTGCTGCCATT GAAACCGCCACGGCCAGAATCGAGGAGATGCTCAGCAAATCCCGAGCTGGAGACACAGGA GTCAAACTGGAGGTGAACGAAAGGATCCTCGGTTCCTGTACCAGCCTCATGCAGGCTATT CAGGTCCTGATCGTGGCCTCGAAGGAGCTCCAGAGAGAGATTGTGGAGAGTGGCCGGGGT ACAGCATCCCCTAAAGAGTTTTATGCCAAGAATTCTCGATGGACGGAAGGACTTATCTCA GCCTCCAAAGCCGTGGGCTGGGGAGCCACTGTCATGGTGGATGCAGCCGATCTGGTGGTC CAAGGCAGAGGGAAATTCGAGGAGCTGATGGTGTGTTCGCGTGAAATTGCCGCCAGCACA GCCCAGCTGGTGGCCGCCTCCAAGGTGAAAGCTGATAAGGACAGCCCAAACCTGGCCCAG CTGCAGCAGGCCTCTCGGGGTGTGAACCAGGCCACCGCCGCAGTTGTGGCCTCAACCGTT TCTGGGAAATTACAGATCGAAGACACAGACAACATGGACTTCTCAAGCATGACGCTGACC CAGATCAAACGCCAGGAGATGGATTCTCAGGTTCGGGTGCTAGAGCTAGAAAACGAACTG CAGAAGGAGCGTCAGAAACTGGGAGAGCTTCGGAAAAAGCACTACGAGCTCGCTGGGGTC GCCGAGGGCTGGGAGGAAGGAACAGAAGCATCACCACCTACGCTGCAAGAAGCAGTCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCTGGAAACGTCTGCCCAGTCAGAAGCCAAATGGACCGCACAGATCGCCGAACTGGAG AAGGAGCGGGGCAGCCTGGTGAACGCCGTGGCTCGCCAGGAGGAACAGTTGTCTGCTCTT CAGGAGCAGCTGGAATACACCCAGCTCAAACTGTCCAGCACTCAGGAATCTATATGCCAG CTCGCGAAGGACCAGCGAAAAATACTCCTGGCGGAGTCACGGAGGGCTGCGGAGCAGGTG GTGCAGGAGGCGCTGAGGCAGTTCGAGGAGCCCACTCTCTTCAGCTGCGCTGGATCCGCA GATCACCTACTCTGCAAGGTCAGGTCCGTTTCCAGCTGCATTGAGCAACTGGAACAATGC TGGAGCCAGTATCTGGCCTGCCCGGAAGATATCAGTGGGCTCCTCCATGCCGTCACCCTC CTGGCCCACTTGACCAGTGACACCATTGTTCACGGCAGCACCACCTGCCTCAGGGCCCCG CCGGAGCCTGCCGACTCATTGACCGAGGCCTGTAAGCAGTACGGCAGGGAGACCCTCATC TATCTGGGCTTCCTGGAGGAAGAAGGAATCCTCGAGAAGGCCGACAGCACCGCCGTGAGG AGCTGCCTCACCAGGATCACAGCCATTGGCGAGGAGCTCCTGCCCAGAGGCCTGGACATC AAACAGGAGGAGCTGGGGGACCTGGTGGACAAGGAGCTGGCTGCCACTTCTGCTGCCATT GAAACCGCCACGGCCAGAATCGAGGAGATGCTCAGCAAATCCCGAGCTGGAGACACAGGA GTCAAACTGGAGGTGAACGAAAGGATCCTCGGTTCCTGTACCAGCCTCATGCAGGCTATT CAGGTCCTGATCGTGGCCTCGAAGGAGCTCCAGAGAGAGATTGTGGAGAGTGGCCGGGGT ACAGCATCCCCTAAAGAGTTTTATGCCAAGAATTCTCGATGGACGGAAGGACTTATCTCA GCCTCCAAAGCCGTGGGCTGGGGAGCCACTGTCATGGTGGATGCAGCCGATCTGGTGGTC CAAGGCAGAGGGAAATTCGAGGAGCTGATGGTGTGTTCGCGTGAAATTGCCGCCAGCACA GCCCAGCTGGTGGCCGCCTCCAAGGTGAAAGCTGATAAGGACAGCCCAAACCTGGCCCAG CTGCAGCAGGCCTCTCGGGGTGTGAACCAGGCCACCGCCGCAGTTGTGGCCTCAACCGTT TCTGGGAAATTACAGATCGAAGACACAGACAACATGGACTTCTCAAGCATGACGCTGACC CAGATCAAACGCCAGGAGATGGATTCTCAGGTTCGGGTGCTAGAGCTAGAAAACGAACTG CAGAAGGAGCGTCAGAAACTGGGAGAGCTTCGGAAAAAGCACTACGAGCTCGCTGGGGTC GCCGAGGGCTGGGAGGAAGGAACAGAAGCATCACCACCTACGCTGCAAGAAGCAGTCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 500-618, - strand, RNAz p=0.593076 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 500-618, - strand, RNAz p=0.593076 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 155-313, gnl|bosTau2|chr25 (27998149-27998307) | |
| 155-313, gnl|Hg17|chr7 (74829513-74829358) | |
| 155-313, gnl|Mm7|chr5 (134401614-134401458) | |
| 382-496, gnl|bosTau2|chr25 (28000714-28000828) | |
| 382-496, gnl|canFam2|chr6 (9975709-9975792) | |
| 382-496, gnl|dasNov1|scaffold_38557 (13773-13690) | |
| 382-496, gnl|echTel1|scaffold_228268 (3634-3551) | |
| 382-496, gnl|fr1|chrUn (223072917-223072993) | |
| 382-496, gnl|galGal2|chr19 (204285-204365) | |
| 382-496, gnl|hg17|chr7 (74828051-74828134) | |
| 382-496, gnl|Hg17|chr7 (74828178-74828063) | |
| 382-496, gnl|loxAfr1|scaffold_62537 (1661-1744) | |
| 382-496, gnl|mm7|chr5 (134399985-134400068) | |
| 382-496, gnl|Mm7|chr5 (134400111-134399997) | |
| 382-496, gnl|monDom2|scaffold_77 (5612623-5612540) | |
| 382-496, gnl|oryCun1|scaffold_195078 (7985-8067) | |
| 382-496, gnl|panTro1|chr6 (75920999-75921082) | |
| 382-496, gnl|rheMac2|chr3 (50734126-50734043) | |
| 382-496, gnl|rn3|chr12 (22392578-22392495) | |
| 500-632, gnl|bosTau2|chr25 (28000917-28001049) | |
| 500-632, gnl|Hg17|chr7 (74827536-74827404) | |
| 500-632, gnl|Mm7|chr5 (134399913-134399781) | |
| 894-999, gnl|bosTau2|chr25 (28009348-28009453) | |
| 894-999, gnl|canFam2|chr6 (9968627-9968743) | |
| 894-999, gnl|danRer3|chr15 (13604568-13604680) | |
| 894-999, gnl|dasNov1|scaffold_38557 (17744-17628) | |
| 894-999, gnl|echTel1|scaffold_243866 (3014-2898) | |
| 894-999, gnl|fr1|chrUn (223070731-223070846) | |
| 894-999, gnl|galGal2|chr19 (203028-203143) | |
| 894-999, gnl|hg17|chr7 (74819028-74819144) | |
| 894-999, gnl|Hg17|chr7 (74819141-74819036) | |
| 894-999, gnl|loxAfr1|scaffold_170737 (1433-1549) | |
| 894-999, gnl|mm7|chr5 (134393392-134393508) | |
| 894-999, gnl|Mm7|chr5 (134393503-134393400) | |
| 894-999, gnl|monDom2|scaffold_77 (5617023-5616907) | |
| 894-999, gnl|oryCun1|scaffold_195078 (3695-3810) | |
| 894-999, gnl|panTro1|chr6 (75911956-75912072) | |
| 894-999, gnl|rheMac2|chr3 (50744230-50744114) | |
| 894-999, gnl|rn3|chr12 (22399298-22399182) | |
| 894-999, gnl|tetNig1|chrUn_random (45918955-45919070) | |
| 894-999, gnl|xenTro1|scaffold_1417 (6846-6964) | |
| 1103-1228, gnl|bosTau2|chr25 (28011036-28011161) | |
| 1103-1228, gnl|canFam2|chr6 (9967180-9967315) | |
| 1103-1228, gnl|danRer3|chr15 (13602814-13602950) | |
| 1103-1228, gnl|dasNov1|scaffold_13029 (81559-81694) | |
| 1103-1228, gnl|echTel1|scaffold_302190 (183-48) | |
| 1103-1228, gnl|fr1|chrUn (223070348-223070475) | |
| 1103-1228, gnl|galGal2|chr19 (202500-202631) | |
| 1103-1228, gnl|hg17|chr7 (74816812-74816947) | |
| 1103-1228, gnl|Hg17|chr7 (74816946-74816821) | |
| 1103-1228, gnl|loxAfr1|scaffold_4238 (14402-14276) | |
| 1103-1228, gnl|mm7|chr5 (134388242-134388376) | |
| 1103-1228, gnl|Mm7|chr5 (134388375-134388250) | |
| 1103-1228, gnl|monDom2|scaffold_77 (5618454-5618319) | |
| 1103-1228, gnl|oryCun1|scaffold_141351 (3954-4081) | |
| 1103-1228, gnl|panTro1|chr6_random (55173587-55173452) | |
| 1103-1228, gnl|rheMac2|chr3 (50746727-50746592) | |
| 1103-1228, gnl|rn3|chr12 (22403234-22403099) | |
| 1103-1228, gnl|tetNig1|chrUn_random (45918532-45918661) | |
| 1103-1228, gnl|xenTro1|scaffold_1417 (4792-4927) | |
| 1288-1400, gnl|bosTau2|chr25 (28013373-28013485) | |
| 1288-1400, gnl|Hg17|chr7 (74813405-74813293) | |
| 1288-1400, gnl|Mm7|chr5 (134384002-134383890) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 155-313, gnl|bosTau2|chr25 (27998149-27998307) | |
| 155-313, gnl|Hg17|chr7 (74829513-74829358) | |
| 155-313, gnl|Mm7|chr5 (134401614-134401458) | |
| 382-496, gnl|bosTau2|chr25 (28000714-28000828) | |
| 382-496, gnl|canFam2|chr6 (9975709-9975792) | |
| 382-496, gnl|dasNov1|scaffold_38557 (13773-13690) | |
| 382-496, gnl|echTel1|scaffold_228268 (3634-3551) | |
| 382-496, gnl|fr1|chrUn (223072917-223072993) | |
| 382-496, gnl|galGal2|chr19 (204285-204365) | |
| 382-496, gnl|hg17|chr7 (74828051-74828134) | |
| 382-496, gnl|Hg17|chr7 (74828178-74828063) | |
| 382-496, gnl|loxAfr1|scaffold_62537 (1661-1744) | |
| 382-496, gnl|mm7|chr5 (134399985-134400068) | |
| 382-496, gnl|Mm7|chr5 (134400111-134399997) | |
| 382-496, gnl|monDom2|scaffold_77 (5612623-5612540) | |
| 382-496, gnl|oryCun1|scaffold_195078 (7985-8067) | |
| 382-496, gnl|panTro1|chr6 (75920999-75921082) | |
| 382-496, gnl|rheMac2|chr3 (50734126-50734043) | |
| 382-496, gnl|rn3|chr12 (22392578-22392495) | |
| 500-632, gnl|bosTau2|chr25 (28000917-28001049) | |
| 500-632, gnl|Hg17|chr7 (74827536-74827404) | |
| 500-632, gnl|Mm7|chr5 (134399913-134399781) | |
| 894-999, gnl|bosTau2|chr25 (28009348-28009453) | |
| 894-999, gnl|canFam2|chr6 (9968627-9968743) | |
| 894-999, gnl|danRer3|chr15 (13604568-13604680) | |
| 894-999, gnl|dasNov1|scaffold_38557 (17744-17628) | |
| 894-999, gnl|echTel1|scaffold_243866 (3014-2898) | |
| 894-999, gnl|fr1|chrUn (223070731-223070846) | |
| 894-999, gnl|galGal2|chr19 (203028-203143) | |
| 894-999, gnl|hg17|chr7 (74819028-74819144) | |
| 894-999, gnl|Hg17|chr7 (74819141-74819036) | |
| 894-999, gnl|loxAfr1|scaffold_170737 (1433-1549) | |
| 894-999, gnl|mm7|chr5 (134393392-134393508) | |
| 894-999, gnl|Mm7|chr5 (134393503-134393400) | |
| 894-999, gnl|monDom2|scaffold_77 (5617023-5616907) | |
| 894-999, gnl|oryCun1|scaffold_195078 (3695-3810) | |
| 894-999, gnl|panTro1|chr6 (75911956-75912072) | |
| 894-999, gnl|rheMac2|chr3 (50744230-50744114) | |
| 894-999, gnl|rn3|chr12 (22399298-22399182) | |
| 894-999, gnl|tetNig1|chrUn_random (45918955-45919070) | |
| 894-999, gnl|xenTro1|scaffold_1417 (6846-6964) | |
| 1103-1228, gnl|bosTau2|chr25 (28011036-28011161) | |
| 1103-1228, gnl|canFam2|chr6 (9967180-9967315) | |
| 1103-1228, gnl|danRer3|chr15 (13602814-13602950) | |
| 1103-1228, gnl|dasNov1|scaffold_13029 (81559-81694) | |
| 1103-1228, gnl|echTel1|scaffold_302190 (183-48) | |
| 1103-1228, gnl|fr1|chrUn (223070348-223070475) | |
| 1103-1228, gnl|galGal2|chr19 (202500-202631) | |
| 1103-1228, gnl|hg17|chr7 (74816812-74816947) | |
| 1103-1228, gnl|Hg17|chr7 (74816946-74816821) | |
| 1103-1228, gnl|loxAfr1|scaffold_4238 (14402-14276) | |
| 1103-1228, gnl|mm7|chr5 (134388242-134388376) | |
| 1103-1228, gnl|Mm7|chr5 (134388375-134388250) | |
| 1103-1228, gnl|monDom2|scaffold_77 (5618454-5618319) | |
| 1103-1228, gnl|oryCun1|scaffold_141351 (3954-4081) | |
| 1103-1228, gnl|panTro1|chr6_random (55173587-55173452) | |
| 1103-1228, gnl|rheMac2|chr3 (50746727-50746592) | |
| 1103-1228, gnl|rn3|chr12 (22403234-22403099) | |
| 1103-1228, gnl|tetNig1|chrUn_random (45918532-45918661) | |
| 1103-1228, gnl|xenTro1|scaffold_1417 (4792-4927) | |
| 1288-1400, gnl|bosTau2|chr25 (28013373-28013485) | |
| 1288-1400, gnl|Hg17|chr7 (74813405-74813293) | |
| 1288-1400, gnl|Mm7|chr5 (134384002-134383890) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |