Non-Coding RNA Search

Ss1.1-Pig4-TMW8039G03.3

Sequence:


               
               TTTTTTTTTTTTGCATTTTTTCAAATGTTTTATTGGATTTAAAATTCTTTTAAGGGATAT
ACAGATATACAATTAGTTTGATCAGCTACCAGTATATTTTGGTATCCCTTTATTTTTGTA
CCCAAGAGCCAGTTCACTTTTTCTCCATGTTCAAGACTTAACTTTGGTAAAATTTTGCCA
TGTTCATCTTCACCTGTTACTGAAGCATGAGTGTTTCTACCCTGCTTGTTACCAATTGCT
CTTTTAGTTTTCTTCCTGTGAGTATGTTTTGCAGGACTCTTCTGTTTTTTCTCAACTTCA
CTGCTTATATCCCACAACATTATTTTCCCATCATTCCCTCCAGTAAGCAGCAAATATGAT
CCTGGCAGAAAGCAGACCTGGGAGATCCCCAAAGTGTGGCCTTTAAATCCCAATTCCTGT
TCACACTTGACTCCCATCACCCTAAAGATTCGAACCTTACCATCTTCTGCCCCACAACTA
AAAATATTGCCACATGATGCCACAGACACAGAATGGGCTAGGGCAGGGTTTAAAAGCTGA
CCAGGTGATTGTGGGCTTTCCATTTCTTCTGCTTCATCTTCCTGTAAATTTGTAATCCAC
AGTGGCCGGGCTTTCTGAAGGTTCCATAGCATCACCTGCATATCCAGCCCACAGGACACC
AGGCTCTGAGGTCTTTGAGGCCGAAAAGCTACAGAGGAACAGATGTTGGAATGTCTCTTC
AGTGATCTGCTAACTTTCTTATTTTCCAAGTCTAGGATTTTGATTGTTCCAGAGTCATCA
GCAGAAGCCAGCAGGTTTTCAGTTTCATTCAATGAAAGACAATTGATTTCTTCTTCATTC
ACATGAAAATGGTCCAGGGATCCTTTGAGAGACCTGACATCCAGGATGCTAATGGTTTCT
CCATGTGAGGCATAGAGCTTGGTGGGGCAGGAGGGAGAGAATAAGACACTGGTAACATCA
TCAGCTCCTTGGAAGCATGTGTGTCCTAATGGAGTCCCATCTTCACCCCAAACCGTGAGA
TCTCCACCCTCTGCTCCTGAAGCCACTAGCCCTTCTTGACTTGCATTCAGGCAGAGAATA
GGAGAAGAATGTCCACCAGTCCACTTGACTGCCATAATGGCCCAGAAAACTCTGAGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTGCATTTTTTCAAATGTTTTATTGGATTTAAAATTCTTTTAAGGGATAT
ACAGATATACAATTAGTTTGATCAGCTACCAGTATATTTTGGTATCCCTTTATTTTTGTA
CCCAAGAGCCAGTTCACTTTTTCTCCATGTTCAAGACTTAACTTTGGTAAAATTTTGCCA
TGTTCATCTTCACCTGTTACTGAAGCATGAGTGTTTCTACCCTGCTTGTTACCAATTGCT
CTTTTAGTTTTCTTCCTGTGAGTATGTTTTGCAGGACTCTTCTGTTTTTTCTCAACTTCA
CTGCTTATATCCCACAACATTATTTTCCCATCATTCCCTCCAGTAAGCAGCAAATATGAT
CCTGGCAGAAAGCAGACCTGGGAGATCCCCAAAGTGTGGCCTTTAAATCCCAATTCCTGT
TCACACTTGACTCCCATCACCCTAAAGATTCGAACCTTACCATCTTCTGCCCCACAACTA
AAAATATTGCCACATGATGCCACAGACACAGAATGGGCTAGGGCAGGGTTTAAAAGCTGA
CCAGGTGATTGTGGGCTTTCCATTTCTTCTGCTTCATCTTCCTGTAAATTTGTAATCCAC
AGTGGCCGGGCTTTCTGAAGGTTCCATAGCATCACCTGCATATCCAGCCCACAGGACACC
AGGCTCTGAGGTCTTTGAGGCCGAAAAGCTACAGAGGAACAGATGTTGGAATGTCTCTTC
AGTGATCTGCTAACTTTCTTATTTTCCAAGTCTAGGATTTTGATTGTTCCAGAGTCATCA
GCAGAAGCCAGCAGGTTTTCAGTTTCATTCAATGAAAGACAATTGATTTCTTCTTCATTC
ACATGAAAATGGTCCAGGGATCCTTTGAGAGACCTGACATCCAGGATGCTAATGGTTTCT
CCATGTGAGGCATAGAGCTTGGTGGGGCAGGAGGGAGAGAATAAGACACTGGTAACATCA
TCAGCTCCTTGGAAGCATGTGTGTCCTAATGGAGTCCCATCTTCACCCCAAACCGTGAGA
TCTCCACCCTCTGCTCCTGAAGCCACTAGCCCTTCTTGACTTGCATTCAGGCAGAGAATA
GGAGAAGAATGTCCACCAGTCCACTTGACTGCCATAATGGCCCAGAAAACTCTGAGCTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883641|ref|XP_596632.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883641|ref|XP_596632.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-158, - strand, RNAz p=0.555226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.555226

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-189, gnl|bosTau2|chr16 (13614264-13614075)
               

               
               1-189, gnl|Hg17|chr3 (197769358-197769542)
               


               
               630-1134, gnl|bosTau2|chr1 (43254750-43255254)
               

               
               630-1134, gnl|Hg17|chr3 (197776171-197776675)
               

               
               630-1134, gnl|Mm7|chr16 (31926849-31926345)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-189, gnl|bosTau2|chr16 (13614264-13614075)
               

               
               1-189, gnl|Hg17|chr3 (197769358-197769542)
               


               
               630-1134, gnl|bosTau2|chr1 (43254750-43255254)
               

               
               630-1134, gnl|Hg17|chr3 (197776171-197776675)
               

               
               630-1134, gnl|Mm7|chr16 (31926849-31926345)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               tes (0.415628)
               

               
               duo (0.345602)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               duo (0.345602)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-189, gnl\|bosTau2\|chr16 (13614264-13614075)
	1-189, gnl\|Hg17\|chr3 (197769358-197769542)

	630-1134, gnl\|bosTau2\|chr1 (43254750-43255254)
	630-1134, gnl\|Hg17\|chr3 (197776171-197776675)
	630-1134, gnl\|Mm7\|chr16 (31926849-31926345)

	tes (0.415628)
	duo (0.345602)
	isp (0.150376)
	csk (0.140746)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	spc (0.113366)
	cty (0.10408)