Non-Coding RNA Search

Ss1.1-Pig4-TMW8039G08.3

Sequence:


               
               GTTCAAGTTAACACAGAAATACGTGTTGGTAGTACCTCCTTTACCATAGAGTTTGTTCCC
TGTGATTCGGGTAAATAATATCTCAAGGGCAAAGAAAACAAATACCAAACAAAAGCGCTT
TGAAAGTAAATGAAAACAGTTCTTTTGACAGGCCGGTGTGAGTTTATGACCTTGGAGTTA
GCCTTTGTGTTACAGCTAAAATGTTGGTGCTATAAATTCTTCTGATTGTTTACAGATGTT
GATTCTGCTTATGCTCCAAAGTGTGCATGATGTATTTTAAGTAGTACTTTAAAGAAAAAA
ATCTCTTTATAAAATCTGTAATCCCACTTAGTATAAATTTGTTTGGATTTATATATCTCA
TTTGTTACTGGAAATTCATCTTCTTTGAAATTAGGTTGGCGCAGAATTTAATATGTATTC
CACCAAAGCCAATTTGAAATATAAATGTTAAAATATAAGTAGTCATGTGACTTGGTGCCA
GATTATATATGTAATGACAAGAGAAGTTAACAGAGCTTTCTAATACTGTATGGGTACTCT
TAAGAATGATTTTGTTTGGATATAAAGATGTTAAAGGGCCTCCTGTCACATTCACAACAG
TATTCTCCAAAATAATTCGATGCTTCAAAAACAAATGATCATTTGCTTGTATTCTTTGGG
ATTATGATTAGATCAAGTGGTTTATATCATAGTTGCCAAGTGGTGGGAGGTGGCTTACCT
GAAAATGTATGTTTGTGTTTGTTGTATTTTTTCACATTTTGTGAACAAAGCACATTTATT
AAAAATTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAAGTTAACACAGAAATACGTGTTGGTAGTACCTCCTTTACCATAGAGTTTGTTCCC
TGTGATTCGGGTAAATAATATCTCAAGGGCAAAGAAAACAAATACCAAACAAAAGCGCTT
TGAAAGTAAATGAAAACAGTTCTTTTGACAGGCCGGTGTGAGTTTATGACCTTGGAGTTA
GCCTTTGTGTTACAGCTAAAATGTTGGTGCTATAAATTCTTCTGATTGTTTACAGATGTT
GATTCTGCTTATGCTCCAAAGTGTGCATGATGTATTTTAAGTAGTACTTTAAAGAAAAAA
ATCTCTTTATAAAATCTGTAATCCCACTTAGTATAAATTTGTTTGGATTTATATATCTCA
TTTGTTACTGGAAATTCATCTTCTTTGAAATTAGGTTGGCGCAGAATTTAATATGTATTC
CACCAAAGCCAATTTGAAATATAAATGTTAAAATATAAGTAGTCATGTGACTTGGTGCCA
GATTATATATGTAATGACAAGAGAAGTTAACAGAGCTTTCTAATACTGTATGGGTACTCT
TAAGAATGATTTTGTTTGGATATAAAGATGTTAAAGGGCCTCCTGTCACATTCACAACAG
TATTCTCCAAAATAATTCGATGCTTCAAAAACAAATGATCATTTGCTTGTATTCTTTGGG
ATTATGATTAGATCAAGTGGTTTATATCATAGTTGCCAAGTGGTGGGAGGTGGCTTACCT
GAAAATGTATGTTTGTGTTTGTTGTATTTTTTCACATTTTGTGAACAAAGCACATTTATT
AAAAATTTTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr4 (28004452-28005246)
               

               
               1-792, gnl|Hg17|chr7 (112053948-112053163)
               

               
               1-792, gnl|Mm7|chr6 (13567715-13566719)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr4 (28004452-28005246)
               

               
               1-792, gnl|Hg17|chr7 (112053948-112053163)
               

               
               1-792, gnl|Mm7|chr6 (13567715-13566719)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fco (0.471624)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

	1-792, gnl\|bosTau2\|chr4 (28004452-28005246)
	1-792, gnl\|Hg17\|chr7 (112053948-112053163)
	1-792, gnl\|Mm7\|chr6 (13567715-13566719)

	fco (0.471624)
	mgp (0.230681)
	aor (0.195274)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	ova (0.129132)
	jca (0.11396)