Ss1.1-Pig4-TMW8039G16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAGCGGAGCAAGAAAAACAAGAAAGCATTGAATACAGGTTATCCCCAAATTACTTCA GAACACACCAGAAGGAAACACATCCAGGTGACAGACTGTATTTCTTCTGACTCTGTTTCA TCCTCTACCAGTAGTTTCTGGAGCTCGAGCTCTACCCTTTGCAGCATGCAAAATGTGCAT ATGTTGAACAAGGGCATACAAGCAGGTACCTTGGAAATTGTGAATGGTGTCAGAAAACAC ACTCGAGACGTTGGGATGACGTTCCCAACTCCAAGTTCCAGCGAGGCCAGAGTAGAAGAG GACAGTGATGTGACTTCTTTGTCAGAAGAAAAAATAGAAGAGAAAAGAATCCTTACCAGT TATTTTGGGGACACAAAGTTAAGGAAGAACAAGCAGAGCTGCTGTGAAGGAGTTTCATGG TTTGTTCCTGTGGAAAATGTGAAATCTGGTCCTAAGAAGGAAAACCTGCCCAAGTTTCAT GGCCCTGGTATCTCCTGGTTTGCACCAATAACCAACACCAAACCCTGGAGAGAGCCTCTG CGGGAACAGAACTGGCAGGAACAACACATATTCAGCCACGGCTCACTTGCAGGCCCCGGC AGACATCCACTGAAGCCTTTTGTGAGAGCAACCCTGCAGGAGTCACTTCAGCTTCATAGA CCTGACTTCATCTCCCGCTCTGGGGAACGGATAAAGCGCCTGAAGTTAATAGTCCAGGAG AGGAAGCTGCAGAACGTGTTACAGAGTGAGCGGGAGGCACTGTTCAACACTGTGCAAGAA TGGCAAGGCTGCCGGAACCCCATGCACCAGCTCCCCAAGAGAGGTTTCCTGGCTGCTCAA AAGAAAAGGCCTGTTGGAAAGAAGGAAATGATCCAGAGGTCTAAACGGATTTATGAGCAA CTTCCAGAAGTACAGAAAAAGAGAGAAGAGGAAAAGAGGAGATCAGAATACAAGTCATAC CGGCTGCGAGCCCAGCTATATAAGAAGAAAGTGACCAATCAACTCTTGGGGAGGAAAGTC CCTTGGGACTGACATGAGAATATTTTCCTCAGAGCCTTGGAATTATATTTTATCATCCTG GAGGAGCACAATCCTTACTTTATGAGTCTGGTTTAATAAAGCTTGTCCATGTGTAATTGC AAATTACTGACCTTCTAAAGAGTCTTGGGTAGAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAGCGGAGCAAGAAAAACAAGAAAGCATTGAATACAGGTTATCCCCAAATTACTTCA GAACACACCAGAAGGAAACACATCCAGGTGACAGACTGTATTTCTTCTGACTCTGTTTCA TCCTCTACCAGTAGTTTCTGGAGCTCGAGCTCTACCCTTTGCAGCATGCAAAATGTGCAT ATGTTGAACAAGGGCATACAAGCAGGTACCTTGGAAATTGTGAATGGTGTCAGAAAACAC ACTCGAGACGTTGGGATGACGTTCCCAACTCCAAGTTCCAGCGAGGCCAGAGTAGAAGAG GACAGTGATGTGACTTCTTTGTCAGAAGAAAAAATAGAAGAGAAAAGAATCCTTACCAGT TATTTTGGGGACACAAAGTTAAGGAAGAACAAGCAGAGCTGCTGTGAAGGAGTTTCATGG TTTGTTCCTGTGGAAAATGTGAAATCTGGTCCTAAGAAGGAAAACCTGCCCAAGTTTCAT GGCCCTGGTATCTCCTGGTTTGCACCAATAACCAACACCAAACCCTGGAGAGAGCCTCTG CGGGAACAGAACTGGCAGGAACAACACATATTCAGCCACGGCTCACTTGCAGGCCCCGGC AGACATCCACTGAAGCCTTTTGTGAGAGCAACCCTGCAGGAGTCACTTCAGCTTCATAGA CCTGACTTCATCTCCCGCTCTGGGGAACGGATAAAGCGCCTGAAGTTAATAGTCCAGGAG AGGAAGCTGCAGAACGTGTTACAGAGTGAGCGGGAGGCACTGTTCAACACTGTGCAAGAA TGGCAAGGCTGCCGGAACCCCATGCACCAGCTCCCCAAGAGAGGTTTCCTGGCTGCTCAA AAGAAAAGGCCTGTTGGAAAGAAGGAAATGATCCAGAGGTCTAAACGGATTTATGAGCAA CTTCCAGAAGTACAGAAAAAGAGAGAAGAGGAAAAGAGGAGATCAGAATACAAGTCATAC CGGCTGCGAGCCCAGCTATATAAGAAGAAAGTGACCAATCAACTCTTGGGGAGGAAAGTC CCTTGGGACTGACATGAGAATATTTTCCTCAGAGCCTTGGAATTATATTTTATCATCCTG GAGGAGCACAATCCTTACTTTATGAGTCTGGTTTAATAAAGCTTGTCCATGTGTAATTGC AAATTACTGACCTTCTAAAGAGTCTTGGGTAGAGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 83-226, gnl|bosTau2|chr11 (11452747-11452890) | |
| 83-226, gnl|canFam2|chr17 (52382868-52382746) | |
| 83-226, gnl|hg17|chr2 (73809847-73809968) | |
| 83-226, gnl|Hg17|chr2 (73738178-73738333) | |
| 83-226, gnl|Mm7|chr6 (85823832-85823971) | |
| 83-226, gnl|mm7|chr6_random (60650-60532) | |
| 83-226, gnl|monDom2|scaffold_61 (10794479-10794388) | |
| 83-226, gnl|oryCun1|scaffold_94147 (20378-20256) | |
| 83-226, gnl|panTro1|chr12 (76227229-76227351) | |
| 83-226, gnl|rheMac2|chr13 (73907986-73908107) | |
| 83-226, gnl|rn3|chr4 (120183713-120183831) | |
| 408-640, gnl|bosTau2|chr11 (11455546-11455778) | |
| 408-640, gnl|Hg17|chr2 (73739975-73740219) | |
| 408-640, gnl|Mm7|chr6 (85825577-85825821) | |
| 986-1176, gnl|bosTau2|chr11 (11464995-11465190) | |
| 986-1176, gnl|canFam2|chr17 (52373149-52372983) | |
| 986-1176, gnl|danRer3|chr13 (9197706-9197532) | |
| 986-1176, gnl|echTel1|scaffold_282936 (14723-14564) | |
| 986-1176, gnl|hg17|chr2 (73748304-73748471) | |
| 986-1176, gnl|Hg17|chr2 (73748348-73748548) | |
| 986-1176, gnl|loxAfr1|scaffold_837 (79507-79345) | |
| 986-1176, gnl|mm7|chr6 (85831535-85831699) | |
| 986-1176, gnl|Mm7|chr6 (85831569-85831761) | |
| 986-1176, gnl|oryCun1|scaffold_94147 (11504-11345) | |
| 986-1176, gnl|panTro1|chr12 (76165476-76165643) | |
| 986-1176, gnl|rheMac2|chr13 (73918052-73918219) | |
| 986-1176, gnl|rn3|chr4 (120191239-120191392) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-226, gnl|bosTau2|chr11 (11452747-11452890) | |
| 83-226, gnl|canFam2|chr17 (52382868-52382746) | |
| 83-226, gnl|hg17|chr2 (73809847-73809968) | |
| 83-226, gnl|Hg17|chr2 (73738178-73738333) | |
| 83-226, gnl|Mm7|chr6 (85823832-85823971) | |
| 83-226, gnl|mm7|chr6_random (60650-60532) | |
| 83-226, gnl|monDom2|scaffold_61 (10794479-10794388) | |
| 83-226, gnl|oryCun1|scaffold_94147 (20378-20256) | |
| 83-226, gnl|panTro1|chr12 (76227229-76227351) | |
| 83-226, gnl|rheMac2|chr13 (73907986-73908107) | |
| 83-226, gnl|rn3|chr4 (120183713-120183831) | |
| 408-640, gnl|bosTau2|chr11 (11455546-11455778) | |
| 408-640, gnl|Hg17|chr2 (73739975-73740219) | |
| 408-640, gnl|Mm7|chr6 (85825577-85825821) | |
| 986-1176, gnl|bosTau2|chr11 (11464995-11465190) | |
| 986-1176, gnl|canFam2|chr17 (52373149-52372983) | |
| 986-1176, gnl|danRer3|chr13 (9197706-9197532) | |
| 986-1176, gnl|echTel1|scaffold_282936 (14723-14564) | |
| 986-1176, gnl|hg17|chr2 (73748304-73748471) | |
| 986-1176, gnl|Hg17|chr2 (73748348-73748548) | |
| 986-1176, gnl|loxAfr1|scaffold_837 (79507-79345) | |
| 986-1176, gnl|mm7|chr6 (85831535-85831699) | |
| 986-1176, gnl|Mm7|chr6 (85831569-85831761) | |
| 986-1176, gnl|oryCun1|scaffold_94147 (11504-11345) | |
| 986-1176, gnl|panTro1|chr12 (76165476-76165643) | |
| 986-1176, gnl|rheMac2|chr13 (73918052-73918219) | |
| 986-1176, gnl|rn3|chr4 (120191239-120191392) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cte (0.29274) | |
| col (0.195008) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| col (0.195008) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) |