Non-Coding RNA Search

Ss1.1-Pig4-TMW8039G20.3

Sequence:


               
               ATAGGAAAGTTACTTTCTCCACGACACAGGACTTCACTCCAGAGTTACCATTATGAGCGT
GCCAGCGCCGGTCCACCAAGGGTGCATTAGTCTTGGTTAGTCTCATTTTGTCACAAGGTA
GTGCTGTGAAATTTACATCTGTTGACATGAAATGCAGAGTCATTGCTGCCCTGGGCAGCA
GATACACTGTTCATTTTATGAGGCTATAGAGACGAATCTGTTTGGGACCACAACCACCTA
AATTGGACATTTCTATGTCACAAAGGGGCCGGGTGTTCTCTGGATCAGTCACTGGTTGGT
GCTTTATTGTAATCCTTTTGCACTGATCCCCACCAGTTAGGAACTGGACCCTGGGAATAA
GCTGAGGGTGCTTAACTGTTGGGGGAGGGTGACTGTAGCCATGTGAAAGACAAAATAAGG
GTTTTTCTGCAAAATTTCCACTTGAGGATTTTTACATTTAATATTTTTTTAAAACAGTTA
AAAGAGCAAAAAAAATTTTTAAGTGTAATCTAGTTGCAATGTATGCACACATTTTGAATG
GCTTTATTTTTATTGTGTAAAACTGTTGAACACATGACTGTGATGCACAAATTCTTTACG
TGTAAGGAGACTATGCATTTTACAGTATCTCATTTCATGACTGAGTAATGAAACAGTTGT
ACATTGAACTGCCATTGCTGTATTAAGTGCTTTCCTTTTCTTTGCAGCTATTACAGAGTT
GTATTTATTTTATGCAGGTGGATTTTCGTTTTCCTGATGCCATGATGTTTACTTCAGCTG
TCTTTCTTTCTTTGTGTATCTGCATGTTGTCATGTATGATGCAAATGTATGTAAAGGCTG
TGGCAACTGTAAATTAGATTTTGTAAAGGGCTGGTCACATGTGGATCTGGTTTATGAATG
CATTGGGGATTATTTTAGTAAAGATCCCCTTTTCAAACATTTAGGTGTGAACACCAAAAA
AAAGCATTTTCTCAACACAAATTAATAGCTGGTTCTATTTTTTTTAAACTTAGAAAAAAT
AAAGTTGATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGGAAAGTTACTTTCTCCACGACACAGGACTTCACTCCAGAGTTACCATTATGAGCGT
GCCAGCGCCGGTCCACCAAGGGTGCATTAGTCTTGGTTAGTCTCATTTTGTCACAAGGTA
GTGCTGTGAAATTTACATCTGTTGACATGAAATGCAGAGTCATTGCTGCCCTGGGCAGCA
GATACACTGTTCATTTTATGAGGCTATAGAGACGAATCTGTTTGGGACCACAACCACCTA
AATTGGACATTTCTATGTCACAAAGGGGCCGGGTGTTCTCTGGATCAGTCACTGGTTGGT
GCTTTATTGTAATCCTTTTGCACTGATCCCCACCAGTTAGGAACTGGACCCTGGGAATAA
GCTGAGGGTGCTTAACTGTTGGGGGAGGGTGACTGTAGCCATGTGAAAGACAAAATAAGG
GTTTTTCTGCAAAATTTCCACTTGAGGATTTTTACATTTAATATTTTTTTAAAACAGTTA
AAAGAGCAAAAAAAATTTTTAAGTGTAATCTAGTTGCAATGTATGCACACATTTTGAATG
GCTTTATTTTTATTGTGTAAAACTGTTGAACACATGACTGTGATGCACAAATTCTTTACG
TGTAAGGAGACTATGCATTTTACAGTATCTCATTTCATGACTGAGTAATGAAACAGTTGT
ACATTGAACTGCCATTGCTGTATTAAGTGCTTTCCTTTTCTTTGCAGCTATTACAGAGTT
GTATTTATTTTATGCAGGTGGATTTTCGTTTTCCTGATGCCATGATGTTTACTTCAGCTG
TCTTTCTTTCTTTGTGTATCTGCATGTTGTCATGTATGATGCAAATGTATGTAAAGGCTG
TGGCAACTGTAAATTAGATTTTGTAAAGGGCTGGTCACATGTGGATCTGGTTTATGAATG
CATTGGGGATTATTTTAGTAAAGATCCCCTTTTCAAACATTTAGGTGTGAACACCAAAAA
AAAGCATTTTCTCAACACAAATTAATAGCTGGTTCTATTTTTTTTAAACTTAGAAAAAAT
AAAGTTGATTTT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               267-386, - strand, RNAz p=0.584253
               

               
               506-663, - strand, RNAz p=0.962908
               

               
               703-816, - strand, RNAz p=0.531872

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-386, - strand, RNAz p=0.584253
               

               
               506-663, - strand, RNAz p=0.962908
               

               
               703-816, - strand, RNAz p=0.531872

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1032, gnl|bosTau2|chr16 (53732027-53733071)
               

               
               1-1032, gnl|Hg17|chr1 (208307766-208306728)
               

               
               1-1032, gnl|Mm7|chr1 (191334803-191335883)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr16 (53732027-53733071)
               

               
               1-1032, gnl|Hg17|chr1 (208307766-208306728)
               

               
               1-1032, gnl|Mm7|chr1 (191334803-191335883)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               lun (0.300978)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               lun (0.300978)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

	267-386, - strand, RNAz p=0.584253
	506-663, - strand, RNAz p=0.962908
	703-816, - strand, RNAz p=0.531872

	1-1032, gnl\|bosTau2\|chr16 (53732027-53733071)
	1-1032, gnl\|Hg17\|chr1 (208307766-208306728)
	1-1032, gnl\|Mm7\|chr1 (191334803-191335883)

	pro (0.512033)
	lun (0.300978)
	fat (0.147427)
	hlv (0.139256)
	ste (0.135208)
	ret (0.128733)
	jca (0.11396)