Non-Coding RNA Search

Ss1.1-Pig4-TMW8039G21.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGCACAAGTGTTTATTCGGGT
TTCGTGGACACTCCGGAGACACAGAGAAAGCGCTGAAGTTTGGAGAAGGACGCCTGCGGC
CTCTCAGGGCAGCAGGGCCCTGCGGTCAGCTCCTGGAGCCCTGGCCGCTCCCGCCACCGC
CGCCGCCTGGGGGGCCCTGGGCCTCGGCAGGCATGAGGGCCGGAGAGCCGCCAGCCTCCA
CCCTGCGCCTGGCTTCCACGACTCGGCCCCACTAGGTTCAGGTTCACCGGTGGCCCGGCA
GCGCTGTGGCCTGAGTCGGGCTCAGGGTTCCTCCAGGGCCCTGGGCAGCTGCTTGATCTG
GCGGCCCTGGACCACCCGCAGGGCGCCCCCCGCGGCCTGGTGCAGCTGGCTCTCCAGGGC
GCTGCGGAGGTCGCTGACCTGCACGCCGGGCAGCGGGTGGAGGCTGATAATCACCCCCTC
CTTTGGGGCCGGCGCCCGCTCTGTGCCAGGAGCCACGTCCCGCCGTCTCCTCCGAAGGTC
AGAGCCGGCCTGGACTTTCAGGTCCCGGTTGGGTTTGGCATTGTCCAGCTTCTGAGCCCC
GGGCACAGCCGGTTGGTGCCCAAGCTCAGGGTCCGGCCTCTGCTCAGCAGGCTCTGGGCC
GGCAGCGTCCTTGCCGGGGACAGGCACGTGGTCTCTGCCACCCTGCTGGCCTGCCCCGCC
CCCCGCGGCTGCTCCCCCTGACCTGTTGGACAGGCCTGCAGGTACCCGGTCGCGGCTCAC
TGGCTGGGGCTTGGCCTGGGGCTCCCCGGCCGCTGCCCCCGCCCCCGGAGCGGCTGCCCC
TGCAGCTGGCGCCTCCTTTCCGGACTTATTCCTTTCGAGGGCGCCTCCACCAAAAACGTC
CTGGCTCTGCCCAGGGCTGTCCCCAGCACCGTGCTTCTCTGGGCTCCCGGGCACCCGGGC
GGGGTCCGGCACAGGGACACGCTCTGGCACGTGGGCACCCTCGGCCTCGGGCACGGCGCC
CCGCTGGCCTTCCCTGGGCTCGGCCTGTGCTGCCTGGGGCTCTGGGTCAGCGCCCCCAGC
AGGTGCGGCTGGGACTCTGCCTGCGGCCCCCTCGGGCTCCTCCTTGGAGTGCTGACTGTG
CCCCTGGGGCAGGGCGGGGGGCTGCCCGGGAGCGCCGGGCACAGCTTCCAAAGGCTGCGG
AGGGAGACGCTCCACCATCCCTGCGACGTGGGCCTCCTGCTCCTTACCTCTGGGTGCGGC
CACCCCCGGCTCGGCCTGCACGTCCGCATCCTCAGCATCCTGGCCGTCCTGCCTCTGCTG
GTGGATCTCCTTATGCTGCTCTTCAATCACCGCGAGCAGCTTCTCCTGCTGGTCCAAGAG
GCGCTTCTGCTGCACCTGCTGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGCACAAGTGTTTATTCGGGT
TTCGTGGACACTCCGGAGACACAGAGAAAGCGCTGAAGTTTGGAGAAGGACGCCTGCGGC
CTCTCAGGGCAGCAGGGCCCTGCGGTCAGCTCCTGGAGCCCTGGCCGCTCCCGCCACCGC
CGCCGCCTGGGGGGCCCTGGGCCTCGGCAGGCATGAGGGCCGGAGAGCCGCCAGCCTCCA
CCCTGCGCCTGGCTTCCACGACTCGGCCCCACTAGGTTCAGGTTCACCGGTGGCCCGGCA
GCGCTGTGGCCTGAGTCGGGCTCAGGGTTCCTCCAGGGCCCTGGGCAGCTGCTTGATCTG
GCGGCCCTGGACCACCCGCAGGGCGCCCCCCGCGGCCTGGTGCAGCTGGCTCTCCAGGGC
GCTGCGGAGGTCGCTGACCTGCACGCCGGGCAGCGGGTGGAGGCTGATAATCACCCCCTC
CTTTGGGGCCGGCGCCCGCTCTGTGCCAGGAGCCACGTCCCGCCGTCTCCTCCGAAGGTC
AGAGCCGGCCTGGACTTTCAGGTCCCGGTTGGGTTTGGCATTGTCCAGCTTCTGAGCCCC
GGGCACAGCCGGTTGGTGCCCAAGCTCAGGGTCCGGCCTCTGCTCAGCAGGCTCTGGGCC
GGCAGCGTCCTTGCCGGGGACAGGCACGTGGTCTCTGCCACCCTGCTGGCCTGCCCCGCC
CCCCGCGGCTGCTCCCCCTGACCTGTTGGACAGGCCTGCAGGTACCCGGTCGCGGCTCAC
TGGCTGGGGCTTGGCCTGGGGCTCCCCGGCCGCTGCCCCCGCCCCCGGAGCGGCTGCCCC
TGCAGCTGGCGCCTCCTTTCCGGACTTATTCCTTTCGAGGGCGCCTCCACCAAAAACGTC
CTGGCTCTGCCCAGGGCTGTCCCCAGCACCGTGCTTCTCTGGGCTCCCGGGCACCCGGGC
GGGGTCCGGCACAGGGACACGCTCTGGCACGTGGGCACCCTCGGCCTCGGGCACGGCGCC
CCGCTGGCCTTCCCTGGGCTCGGCCTGTGCTGCCTGGGGCTCTGGGTCAGCGCCCCCAGC
AGGTGCGGCTGGGACTCTGCCTGCGGCCCCCTCGGGCTCCTCCTTGGAGTGCTGACTGTG
CCCCTGGGGCAGGGCGGGGGGCTGCCCGGGAGCGCCGGGCACAGCTTCCAAAGGCTGCGG
AGGGAGACGCTCCACCATCCCTGCGACGTGGGCCTCCTGCTCCTTACCTCTGGGTGCGGC
CACCCCCGGCTCGGCCTGCACGTCCGCATCCTCAGCATCCTGGCCGTCCTGCCTCTGCTG
GTGGATCTCCTTATGCTGCTCTTCAATCACCGCGAGCAGCTTCTCCTGCTGGTCCAAGAG
GCGCTTCTGCTGCACCTGCTGTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61355106|gb|AAX41102.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61355106|gb|AAX41102.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               268-366, - strand, RNAz p=0.987205
               

               
               527-646, - strand, RNAz p=0.600063
               

               
               1094-1213, - strand, RNAz p=0.539212

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-366, - strand, RNAz p=0.987205
               

               
               527-646, - strand, RNAz p=0.600063
               

               
               1094-1213, - strand, RNAz p=0.539212

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC014156, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC014156, -

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               224-699, gnl|bosTau2|chr19 (44942223-44942694)
               

               
               224-699, gnl|Hg17|chr17 (76833798-76834343)
               


               
               749-1285, gnl|bosTau2|chr19 (44942813-44943364)
               

               
               749-1285, gnl|Hg17|chr17 (76834477-76835067)
               

               
               749-1285, gnl|Mm7|chr11 (120214528-120215080)
               


               
               1289-1404, gnl|bosTau2|chr19 (44944003-44944118)
               

               
               1289-1404, gnl|canFam2|chr9 (3837479-3837348)
               

               
               1289-1404, gnl|danRer3|chr12 (31998509-31998634)
               

               
               1289-1404, gnl|dasNov1|scaffold_95260 (4917-5044)
               

               
               1289-1404, gnl|echTel1|scaffold_127460 (778-670)
               

               
               1289-1404, gnl|fr1|chrUn (91485836-91485953)
               

               
               1289-1404, gnl|galGal2|chr3_random (192981-192848)
               

               
               1289-1404, gnl|hg17|chr17 (76835276-76835407)
               

               
               1289-1404, gnl|Hg17|chr17 (76835278-76835403)
               

               
               1289-1404, gnl|loxAfr1|scaffold_83243 (1903-1760)
               

               
               1289-1404, gnl|mm7|chr11 (120215475-120215606)
               

               
               1289-1404, gnl|Mm7|chr11 (120215487-120215602)
               

               
               1289-1404, gnl|monDom2|scaffold_18 (13274518-13274649)
               

               
               1289-1404, gnl|rheMac2|chr16 (76704498-76704629)
               

               
               1289-1404, gnl|rn3|chr10 (109533331-109533462)
               

               
               1289-1404, gnl|tetNig1|chr2 (4125411-4125300)
               

               
               1289-1404, gnl|xenTro1|scaffold_1431 (147455-147574)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               224-699, gnl|bosTau2|chr19 (44942223-44942694)
               

               
               224-699, gnl|Hg17|chr17 (76833798-76834343)
               


               
               749-1285, gnl|bosTau2|chr19 (44942813-44943364)
               

               
               749-1285, gnl|Hg17|chr17 (76834477-76835067)
               

               
               749-1285, gnl|Mm7|chr11 (120214528-120215080)
               


               
               1289-1404, gnl|bosTau2|chr19 (44944003-44944118)
               

               
               1289-1404, gnl|canFam2|chr9 (3837479-3837348)
               

               
               1289-1404, gnl|danRer3|chr12 (31998509-31998634)
               

               
               1289-1404, gnl|dasNov1|scaffold_95260 (4917-5044)
               

               
               1289-1404, gnl|echTel1|scaffold_127460 (778-670)
               

               
               1289-1404, gnl|fr1|chrUn (91485836-91485953)
               

               
               1289-1404, gnl|galGal2|chr3_random (192981-192848)
               

               
               1289-1404, gnl|hg17|chr17 (76835276-76835407)
               

               
               1289-1404, gnl|Hg17|chr17 (76835278-76835403)
               

               
               1289-1404, gnl|loxAfr1|scaffold_83243 (1903-1760)
               

               
               1289-1404, gnl|mm7|chr11 (120215475-120215606)
               

               
               1289-1404, gnl|Mm7|chr11 (120215487-120215602)
               

               
               1289-1404, gnl|monDom2|scaffold_18 (13274518-13274649)
               

               
               1289-1404, gnl|rheMac2|chr16 (76704498-76704629)
               

               
               1289-1404, gnl|rn3|chr10 (109533331-109533462)
               

               
               1289-1404, gnl|tetNig1|chr2 (4125411-4125300)
               

               
               1289-1404, gnl|xenTro1|scaffold_1431 (147455-147574)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbr (0.383926)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.383926)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	268-366, - strand, RNAz p=0.987205
	527-646, - strand, RNAz p=0.600063
	1094-1213, - strand, RNAz p=0.539212

	224-699, gnl\|bosTau2\|chr19 (44942223-44942694)
	224-699, gnl\|Hg17\|chr17 (76833798-76834343)

	749-1285, gnl\|bosTau2\|chr19 (44942813-44943364)
	749-1285, gnl\|Hg17\|chr17 (76834477-76835067)
	749-1285, gnl\|Mm7\|chr11 (120214528-120215080)

	1289-1404, gnl\|bosTau2\|chr19 (44944003-44944118)
	1289-1404, gnl\|canFam2\|chr9 (3837479-3837348)
	1289-1404, gnl\|danRer3\|chr12 (31998509-31998634)
	1289-1404, gnl\|dasNov1\|scaffold_95260 (4917-5044)
	1289-1404, gnl\|echTel1\|scaffold_127460 (778-670)
	1289-1404, gnl\|fr1\|chrUn (91485836-91485953)
	1289-1404, gnl\|galGal2\|chr3_random (192981-192848)
	1289-1404, gnl\|hg17\|chr17 (76835276-76835407)
	1289-1404, gnl\|Hg17\|chr17 (76835278-76835403)
	1289-1404, gnl\|loxAfr1\|scaffold_83243 (1903-1760)
	1289-1404, gnl\|mm7\|chr11 (120215475-120215606)
	1289-1404, gnl\|Mm7\|chr11 (120215487-120215602)
	1289-1404, gnl\|monDom2\|scaffold_18 (13274518-13274649)
	1289-1404, gnl\|rheMac2\|chr16 (76704498-76704629)
	1289-1404, gnl\|rn3\|chr10 (109533331-109533462)
	1289-1404, gnl\|tetNig1\|chr2 (4125411-4125300)
	1289-1404, gnl\|xenTro1\|scaffold_1431 (147455-147574)

	cbr (0.383926)
	duo (0.172801)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	ebs (0.118301)
	jej (0.0989218)