Ss1.1-Pig4-TMW8039G23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGGCTCTGCAGCCCTTGATTTACCCCCTCTCCCAGGTCATCATCGGCTGCATCAAGCT GGTTCCCACTGCCCGCTTCTACCCACTGCGCATGCACTGCGTGCGCGCCCTGACACTGCT CTCGGAGGGCACGGGCACCTTCATCCCAGTGCTGCCCTTCATCCTGGAGGTTTTCCAGCA GGTCGACTTCAACAGGAGGCCAGGGCGCATGAGCTCGAGGCCCATCAACTTCGCTGTGAT CCTGAAGCTGTCCAAGGGCAGCTTGCAGGAGAAGGCATACCGGGATGGTCTGGTGGAGCA GCTGTATGACCTCACCCTGGAGTACCTGCACAGTCAGGCCTACAGCATTGCTTTCCCTGA GCTGGCACTGCCCGCTGTCCTGCAGCTGAAATCCTTCCTCCGGGAGTGCAAGGTCGCCAA CTACTGCCGTCAGGTGCGCCAGCTGCTGGAGAAGGTGCAGGAGAACGCAGAGCACATCCG CAGCCTCCGCCAGAGCGTCTCCTTTGGCGTGTCTGACCAGCGCGCAGTGGATGCCTGGGA GAAGCGGACCCGAGACGAGGGGACCCCACTCACCAAGTACTACAGCCAGTGGCGGAAGCT GAGGGACCGAGAGATCCAGCTGGAGATCAGTGGCAAAGAGCGTCTGGAAGACTTGAATTT CCCCGAGGTAAAGCGCCGCAAGGTCGGGGACAGGAAGGATGAAGACCGGGCCGAATTCAA GGCCCTCTTTGACCTGGACAGTGATGAGGATGACTGGGCTCCACGCTTCCCAGAGAGAGG GACGCCTGGGTCCCTGCAAGCTTTGCAGAGGGTGGTGGCGGCGGTGGCGGAGGACAGCAG TGGTAGCAGCATGGAGGAAGAAGTCAGCAAGTCAGAGGATGGAAGCCCAGACACAGAGGC GGGGCTGGACGCCCAGGAGCTGTGGCAGCTGGCCCAGGGGCCAGAGGACGAGCTGCAGGA TCTACAGCTCTCCGAGGAGGACTGAGGGCTGCCTGCCTGGGGGCCTGGGGTGCAGTGTGG CCACCTCACCCTGCAGTCAGGCATGCCGCTTCCAGGCTGGGGCTGAGCACCTGTACACAG GACAGAAGGGCAGTAGATGGGGACAGGGCTTTATTTTTTTACAACATAAAAGACCAGAAA GTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGGCTCTGCAGCCCTTGATTTACCCCCTCTCCCAGGTCATCATCGGCTGCATCAAGCT GGTTCCCACTGCCCGCTTCTACCCACTGCGCATGCACTGCGTGCGCGCCCTGACACTGCT CTCGGAGGGCACGGGCACCTTCATCCCAGTGCTGCCCTTCATCCTGGAGGTTTTCCAGCA GGTCGACTTCAACAGGAGGCCAGGGCGCATGAGCTCGAGGCCCATCAACTTCGCTGTGAT CCTGAAGCTGTCCAAGGGCAGCTTGCAGGAGAAGGCATACCGGGATGGTCTGGTGGAGCA GCTGTATGACCTCACCCTGGAGTACCTGCACAGTCAGGCCTACAGCATTGCTTTCCCTGA GCTGGCACTGCCCGCTGTCCTGCAGCTGAAATCCTTCCTCCGGGAGTGCAAGGTCGCCAA CTACTGCCGTCAGGTGCGCCAGCTGCTGGAGAAGGTGCAGGAGAACGCAGAGCACATCCG CAGCCTCCGCCAGAGCGTCTCCTTTGGCGTGTCTGACCAGCGCGCAGTGGATGCCTGGGA GAAGCGGACCCGAGACGAGGGGACCCCACTCACCAAGTACTACAGCCAGTGGCGGAAGCT GAGGGACCGAGAGATCCAGCTGGAGATCAGTGGCAAAGAGCGTCTGGAAGACTTGAATTT CCCCGAGGTAAAGCGCCGCAAGGTCGGGGACAGGAAGGATGAAGACCGGGCCGAATTCAA GGCCCTCTTTGACCTGGACAGTGATGAGGATGACTGGGCTCCACGCTTCCCAGAGAGAGG GACGCCTGGGTCCCTGCAAGCTTTGCAGAGGGTGGTGGCGGCGGTGGCGGAGGACAGCAG TGGTAGCAGCATGGAGGAAGAAGTCAGCAAGTCAGAGGATGGAAGCCCAGACACAGAGGC GGGGCTGGACGCCCAGGAGCTGTGGCAGCTGGCCCAGGGGCCAGAGGACGAGCTGCAGGA TCTACAGCTCTCCGAGGAGGACTGAGGGCTGCCTGCCTGGGGGCCTGGGGTGCAGTGTGG CCACCTCACCCTGCAGTCAGGCATGCCGCTTCCAGGCTGGGGCTGAGCACCTGTACACAG GACAGAAGGGCAGTAGATGGGGACAGGGCTTTATTTTTTTACAACATAAAAGACCAGAAA GTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 168-284, - strand, RNAz p=0.622404 | |
| 878-1058, - strand, RNAz p=0.999685 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 168-284, - strand, RNAz p=0.622404 | |
| 878-1058, - strand, RNAz p=0.999685 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 168-284, gnl|bosTau2|chr16 (41337627-41337743) | |
| 168-284, gnl|canFam2|chr5 (59178056-59178196) | |
| 168-284, gnl|canFam2|chr5 (59178171-59178064) | |
| 168-284, gnl|danRer3|chr23 (32327125-32327251) | |
| 168-284, gnl|danRer3|chr23 (32327239-32327132) | |
| 168-284, gnl|dasNov1|scaffold_266197 (3756-3625) | |
| 168-284, gnl|dasNov1|scaffold_266197 (3641-3748) | |
| 168-284, gnl|echTel1|scaffold_242189 (4887-5009) | |
| 168-284, gnl|echTel1|scaffold_242189 (5002-4896) | |
| 168-284, gnl|fr1|chrUn (45142080-45141960) | |
| 168-284, gnl|fr1|chrUn (45141965-45142072) | |
| 168-284, gnl|galGal2|chr21 (2789283-2789161) | |
| 168-284, gnl|galGal2|chr21 (2789168-2789274) | |
| 168-284, gnl|hg17|chr1 (924009-924155) | |
| 168-284, gnl|Hg17|chr1 (924128-924012) | |
| 168-284, gnl|hg17|chr2 (130704619-130704726) | |
| 168-284, gnl|loxAfr1|scaffold_155067 (4073-4195) | |
| 168-284, gnl|loxAfr1|scaffold_155067 (4188-4081) | |
| 168-284, gnl|monDom2|scaffold_340 (4983-5102) | |
| 168-284, gnl|monDom2|scaffold_340 (5095-4988) | |
| 168-284, gnl|oryCun1|scaffold_183219 (6932-6782) | |
| 168-284, gnl|oryCun1|scaffold_183219 (6817-6924) | |
| 168-284, gnl|panTro1|chrUn_random (64888448-64888302) | |
| 168-284, gnl|panTro1|chrUn_random (64888333-64888440) | |
| 168-284, gnl|rheMac2|chr1 (4019489-4019635) | |
| 168-284, gnl|rheMac2|chr1 (4019604-4019497) | |
| 168-284, gnl|rn3|chr5 (173089606-173089470) | |
| 168-284, gnl|rn3|chr5 (173089491-173089598) | |
| 168-284, gnl|tetNig1|chr9 (2672349-2672227) | |
| 168-284, gnl|tetNig1|chr9 (2672234-2672341) | |
| 317-572, gnl|bosTau2|chr16 (41339139-41339394) | |
| 317-572, gnl|Hg17|chr1 (922162-921882) | |
| 644-827, gnl|bosTau2|chr16 (41340293-41340478) | |
| 644-827, gnl|canFam2|chr5 (59175080-59174939) | |
| 644-827, gnl|danRer3|chr23 (32303955-32303839) | |
| 644-827, gnl|fr1|chrUn (45144567-45144708) | |
| 644-827, gnl|Hg17|chr1 (921176-921006) | |
| 644-827, gnl|hg17|chr2 (130705084-130705230) | |
| 644-827, gnl|loxAfr1|scaffold_155067 (1130-990) | |
| 644-827, gnl|monDom2|scaffold_340 (2853-2706) | |
| 644-827, gnl|panTro1|chrUn_random (64891287-64891428) | |
| 644-827, gnl|rheMac2|chr1 (4016656-4016512) | |
| 644-827, gnl|rn3|chr5 (173091728-173091852) | |
| 644-827, gnl|tetNig1|chr9 (2674573-2674699) | |
| 878-1068, gnl|bosTau2|chr16 (41341158-41341357) | |
| 878-1068, gnl|Hg17|chr1 (920324-920144) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 168-284, gnl|bosTau2|chr16 (41337627-41337743) | |
| 168-284, gnl|canFam2|chr5 (59178056-59178196) | |
| 168-284, gnl|canFam2|chr5 (59178171-59178064) | |
| 168-284, gnl|danRer3|chr23 (32327125-32327251) | |
| 168-284, gnl|danRer3|chr23 (32327239-32327132) | |
| 168-284, gnl|dasNov1|scaffold_266197 (3756-3625) | |
| 168-284, gnl|dasNov1|scaffold_266197 (3641-3748) | |
| 168-284, gnl|echTel1|scaffold_242189 (4887-5009) | |
| 168-284, gnl|echTel1|scaffold_242189 (5002-4896) | |
| 168-284, gnl|fr1|chrUn (45142080-45141960) | |
| 168-284, gnl|fr1|chrUn (45141965-45142072) | |
| 168-284, gnl|galGal2|chr21 (2789283-2789161) | |
| 168-284, gnl|galGal2|chr21 (2789168-2789274) | |
| 168-284, gnl|hg17|chr1 (924009-924155) | |
| 168-284, gnl|Hg17|chr1 (924128-924012) | |
| 168-284, gnl|hg17|chr2 (130704619-130704726) | |
| 168-284, gnl|loxAfr1|scaffold_155067 (4073-4195) | |
| 168-284, gnl|loxAfr1|scaffold_155067 (4188-4081) | |
| 168-284, gnl|monDom2|scaffold_340 (4983-5102) | |
| 168-284, gnl|monDom2|scaffold_340 (5095-4988) | |
| 168-284, gnl|oryCun1|scaffold_183219 (6932-6782) | |
| 168-284, gnl|oryCun1|scaffold_183219 (6817-6924) | |
| 168-284, gnl|panTro1|chrUn_random (64888448-64888302) | |
| 168-284, gnl|panTro1|chrUn_random (64888333-64888440) | |
| 168-284, gnl|rheMac2|chr1 (4019489-4019635) | |
| 168-284, gnl|rheMac2|chr1 (4019604-4019497) | |
| 168-284, gnl|rn3|chr5 (173089606-173089470) | |
| 168-284, gnl|rn3|chr5 (173089491-173089598) | |
| 168-284, gnl|tetNig1|chr9 (2672349-2672227) | |
| 168-284, gnl|tetNig1|chr9 (2672234-2672341) | |
| 317-572, gnl|bosTau2|chr16 (41339139-41339394) | |
| 317-572, gnl|Hg17|chr1 (922162-921882) | |
| 644-827, gnl|bosTau2|chr16 (41340293-41340478) | |
| 644-827, gnl|canFam2|chr5 (59175080-59174939) | |
| 644-827, gnl|danRer3|chr23 (32303955-32303839) | |
| 644-827, gnl|fr1|chrUn (45144567-45144708) | |
| 644-827, gnl|Hg17|chr1 (921176-921006) | |
| 644-827, gnl|hg17|chr2 (130705084-130705230) | |
| 644-827, gnl|loxAfr1|scaffold_155067 (1130-990) | |
| 644-827, gnl|monDom2|scaffold_340 (2853-2706) | |
| 644-827, gnl|panTro1|chrUn_random (64891287-64891428) | |
| 644-827, gnl|rheMac2|chr1 (4016656-4016512) | |
| 644-827, gnl|rn3|chr5 (173091728-173091852) | |
| 644-827, gnl|tetNig1|chr9 (2674573-2674699) | |
| 878-1068, gnl|bosTau2|chr16 (41341158-41341357) | |
| 878-1068, gnl|Hg17|chr1 (920324-920144) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cje (0.165235) | |
| nco (0.161734) | |
| pty (0.142714) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| nco (0.161734) | |
| pty (0.142714) | |
| eru (0.120048) |