Non-Coding RNA Search

Ss1.1-Pig4-TMW8039H05.5

Sequence:


               
               CGTAAATACTGAGGACCACATTTGTATATTTCAAAAGCAAGGCATTCGGCACTTTCTCCA
GGAGATGTAACACTACTGACTCAACTACTGAGGAGCTTGCTCCATTGCCTTTTCCAGTTC
TTTGACGTAAAAGAGCAGTCGCAGTTCGGTTTCACATGTATTGTTCTATAATCCAGGCAA
TAAATGCTAATTAGTAATGCTCAAGGATCCGACCATTCAGAGTAATTATCATAATTTACT
TCTTCCTTGTTAAAGACATTGCTTGCTGATTAAAAAAAAAATTAAATCGTCGTTTTACCA
TCGCACTGCAGTGGAAATACACTGGAGAGATGTGCAAGGTATAGGAATATCGCTCTGGCT
GTGCTCGAAGTCACCGGCCTGTGCCTCTTAGCTTATTCCAAATGGAATTGCAACTGGATT
TCTCAAATGAAATTCATGTAAATGCATAAAGTTTTGCATGTGTACCAGGAATGTATGATT
TTATTTTACAAACCCCAGGGCTCCTTCTTCCCCGCCCACCCCCTTTCTAAAACCACTTAC
TGAGCAGAACAAAGGAAACTGCTAACTATAGAGGCATCATTAAGTGTGAACAGCAACAGC
GTGATAAAGTATGTGATATGACAACATATTTCATTGCACAAAAGTGCAGATAATTAAATA
ATTCAATACTAACCCTGACTAATTAGCAGAAAGATCTTTAAGGAGGAATCGAGAAAATGG
ATTCAATCAACTTGAATAATAAGCGCCATTCTCCAAGATCACAAATACATATTTGGTTAT
TTGGTGATTGATTGATTGATGATTGATACAGAGAGATGAGGACAAAAGCCTGTTCCTCAC
AATGGATCTTGGATCTGGTGTCCTCTTTAGGACAAATTAATCATATGTTTTAAAAGAGCA
GCATTAAATGTAGGGCTCTCTTTTCCATCAAGGGTATAATCCATTGCACATTTCTCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTAAATACTGAGGACCACATTTGTATATTTCAAAAGCAAGGCATTCGGCACTTTCTCCA
GGAGATGTAACACTACTGACTCAACTACTGAGGAGCTTGCTCCATTGCCTTTTCCAGTTC
TTTGACGTAAAAGAGCAGTCGCAGTTCGGTTTCACATGTATTGTTCTATAATCCAGGCAA
TAAATGCTAATTAGTAATGCTCAAGGATCCGACCATTCAGAGTAATTATCATAATTTACT
TCTTCCTTGTTAAAGACATTGCTTGCTGATTAAAAAAAAAATTAAATCGTCGTTTTACCA
TCGCACTGCAGTGGAAATACACTGGAGAGATGTGCAAGGTATAGGAATATCGCTCTGGCT
GTGCTCGAAGTCACCGGCCTGTGCCTCTTAGCTTATTCCAAATGGAATTGCAACTGGATT
TCTCAAATGAAATTCATGTAAATGCATAAAGTTTTGCATGTGTACCAGGAATGTATGATT
TTATTTTACAAACCCCAGGGCTCCTTCTTCCCCGCCCACCCCCTTTCTAAAACCACTTAC
TGAGCAGAACAAAGGAAACTGCTAACTATAGAGGCATCATTAAGTGTGAACAGCAACAGC
GTGATAAAGTATGTGATATGACAACATATTTCATTGCACAAAAGTGCAGATAATTAAATA
ATTCAATACTAACCCTGACTAATTAGCAGAAAGATCTTTAAGGAGGAATCGAGAAAATGG
ATTCAATCAACTTGAATAATAAGCGCCATTCTCCAAGATCACAAATACATATTTGGTTAT
TTGGTGATTGATTGATTGATGATTGATACAGAGAGATGAGGACAAAAGCCTGTTCCTCAC
AATGGATCTTGGATCTGGTGTCCTCTTTAGGACAAATTAATCATATGTTTTAAAAGAGCA
GCATTAAATGTAGGGCTCTCTTTTCCATCAAGGGTATAATCCATTGCACATTTCTCTCTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-941, gnl|bosTau2|chr15 (20066532-20067472)
               

               
               3-941, gnl|Hg17|chr11 (121472094-121471148)
               

               
               3-941, gnl|Mm7|chr9 (41516376-41517311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-941, gnl|bosTau2|chr15 (20066532-20067472)
               

               
               3-941, gnl|Hg17|chr11 (121472094-121471148)
               

               
               3-941, gnl|Mm7|chr9 (41516376-41517311)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.23007)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	3-941, gnl\|bosTau2\|chr15 (20066532-20067472)
	3-941, gnl\|Hg17\|chr11 (121472094-121471148)
	3-941, gnl\|Mm7\|chr9 (41516376-41517311)