Ss1.1-Pig4-TMW8039H10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCATAAGATCTGAAGATTCTCGCCTCTGCCTCTTTAACCTGATTCTGAAGCTAAAGG GATTAGGGCAAGGATGGTGGAGGCTTTCTGTGCTACCTGGAAGCTGACGGACAGTCAGAA CTTTGATGAGTACATGAAGGCTCTAGGTGTGGGCTTTGCCACTAGGCAGGTGGGAAATGT GACTAAACCAACGGTGATCATCAGTCAGGAGGGGGACAAGGTAGTGATCAGGACTCAGAG CACATTCAAGAACACAGAGATTAGTTTCCATTTGGGAGAAGAATTTGATGAAACCACAGC AGATGACAGAAACTGTAAGTCTGTTGTTAGCCTGGATGGAGACAAACTTGTTCATGTACA GAAGTGGGATGGCAAAGAAACAAATTTTGTAAGAGAGATTAAAGATGGCAAGATGGTCAT GACTCTTACTTTTGGTGATGTGGTTGCTGTTCGCCACTATGAGAAGGCCTAGGAAGCTTC CTGATCTGGGGACGGAGAAGCTCTACAATCTTTCTGTTTACTCAAGCCTCAGTGCTACAC GGCTATTACAGCATAGCTGATCACTAATTAGAAGGTTATCCTTGGTGTGGAGGTGGAAAA TGTGATTTAAAACCTTGTTTTAAAAACTGGTTACTACGTGCAATCAAAACCAATTTTGAT CTGCAGATTTAACACATTTTATAATTCACATTAAACTTTTCAGTTTTTTTTTTTTAAATA TAGAAGTGGATACATTCTATACTTTCCACTGGAATGCAAACCACGTTGGAATAAAAATCT TAGACCCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCATAAGATCTGAAGATTCTCGCCTCTGCCTCTTTAACCTGATTCTGAAGCTAAAGG GATTAGGGCAAGGATGGTGGAGGCTTTCTGTGCTACCTGGAAGCTGACGGACAGTCAGAA CTTTGATGAGTACATGAAGGCTCTAGGTGTGGGCTTTGCCACTAGGCAGGTGGGAAATGT GACTAAACCAACGGTGATCATCAGTCAGGAGGGGGACAAGGTAGTGATCAGGACTCAGAG CACATTCAAGAACACAGAGATTAGTTTCCATTTGGGAGAAGAATTTGATGAAACCACAGC AGATGACAGAAACTGTAAGTCTGTTGTTAGCCTGGATGGAGACAAACTTGTTCATGTACA GAAGTGGGATGGCAAAGAAACAAATTTTGTAAGAGAGATTAAAGATGGCAAGATGGTCAT GACTCTTACTTTTGGTGATGTGGTTGCTGTTCGCCACTATGAGAAGGCCTAGGAAGCTTC CTGATCTGGGGACGGAGAAGCTCTACAATCTTTCTGTTTACTCAAGCCTCAGTGCTACAC GGCTATTACAGCATAGCTGATCACTAATTAGAAGGTTATCCTTGGTGTGGAGGTGGAAAA TGTGATTTAAAACCTTGTTTTAAAAACTGGTTACTACGTGCAATCAAAACCAATTTTGAT CTGCAGATTTAACACATTTTATAATTCACATTAAACTTTTCAGTTTTTTTTTTTTAAATA TAGAAGTGGATACATTCTATACTTTCCACTGGAATGCAAACCACGTTGGAATAAAAATCT TAGACCCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 145-264, + strand, RNAz p=0.51653 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 145-264, + strand, RNAz p=0.51653 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 145-312, gnl|bosTau2|chr14 (25635243-25635076) | |
| 145-312, gnl|canFam2|chr29 (31625520-31625709) | |
| 145-312, gnl|danRer3|chr20 (46904716-46904900) | |
| 145-312, gnl|dasNov1|scaffold_184896 (3132-2943) | |
| 145-312, gnl|echTel1|scaffold_308568 (50946-50756) | |
| 145-312, gnl|fr1|chrUn (328022185-328022369) | |
| 145-312, gnl|galGal2|chr2 (120785417-120785606) | |
| 145-312, gnl|hg17|chr8 (82519604-82519793) | |
| 145-312, gnl|Hg17|chr8 (82519781-82519614) | |
| 145-312, gnl|loxAfr1|scaffold_10783 (64985-64795) | |
| 145-312, gnl|mm7|chr3 (10190564-10190753) | |
| 145-312, gnl|Mm7|chr3 (10190741-10190574) | |
| 145-312, gnl|monDom2|scaffold_4 (75934011-75933823) | |
| 145-312, gnl|oryCun1|scaffold_204330 (24291-24480) | |
| 145-312, gnl|panTro1|chr7 (84651278-84651467) | |
| 145-312, gnl|rheMac2|chr8 (83887121-83887310) | |
| 145-312, gnl|rn3|chr2 (93512639-93512450) | |
| 145-312, gnl|tetNig1|chrUn_random (90004021-90004203) | |
| 145-312, gnl|xenTro1|scaffold_259 (1370159-1369969) | |
| 421-795, gnl|bosTau2|chr9 (14495240-14494864) | |
| 421-795, gnl|canFam2|chr1 (65143594-65143862) | |
| 421-795, gnl|canFam2|chr1 (65143871-65143632) | |
| 421-795, gnl|dasNov1|scaffold_6625 (56207-55962) | |
| 421-795, gnl|dasNov1|scaffold_6625 (55944-56177) | |
| 421-795, gnl|echTel1|scaffold_321356 (38982-39192) | |
| 421-795, gnl|galGal2|chr3 (59667859-59668054) | |
| 421-795, gnl|hg17|chr1 (240113719-240113936) | |
| 421-795, gnl|Hg17|chr6 (123146560-123146919) | |
| 421-795, gnl|hg17|chr8 (11626851-11627107) | |
| 421-795, gnl|loxAfr1|scaffold_26131 (26699-26959) | |
| 421-795, gnl|loxAfr1|scaffold_26131 (26977-26738) | |
| 421-795, gnl|mm7|chr10 (57609699-57609926) | |
| 421-795, gnl|mm7|chr10 (57609928-57609713) | |
| 421-795, gnl|monDom2|scaffold_0 (92295988-92296204) | |
| 421-795, gnl|oryCun1|scaffold_172704 (33984-34211) | |
| 421-795, gnl|oryCun1|scaffold_179359 (43575-43320) | |
| 421-795, gnl|panTro1|chr1 (224108716-224108933) | |
| 421-795, gnl|panTro1|chr7 (12283598-12283854) | |
| 421-795, gnl|rheMac2|chr1 (213475987-213475772) | |
| 421-795, gnl|rheMac2|chr4 (141158816-141158556) | |
| 421-795, gnl|rn3|chr20 (36830012-36829781) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 145-312, gnl|bosTau2|chr14 (25635243-25635076) | |
| 145-312, gnl|canFam2|chr29 (31625520-31625709) | |
| 145-312, gnl|danRer3|chr20 (46904716-46904900) | |
| 145-312, gnl|dasNov1|scaffold_184896 (3132-2943) | |
| 145-312, gnl|echTel1|scaffold_308568 (50946-50756) | |
| 145-312, gnl|fr1|chrUn (328022185-328022369) | |
| 145-312, gnl|galGal2|chr2 (120785417-120785606) | |
| 145-312, gnl|hg17|chr8 (82519604-82519793) | |
| 145-312, gnl|Hg17|chr8 (82519781-82519614) | |
| 145-312, gnl|loxAfr1|scaffold_10783 (64985-64795) | |
| 145-312, gnl|mm7|chr3 (10190564-10190753) | |
| 145-312, gnl|Mm7|chr3 (10190741-10190574) | |
| 145-312, gnl|monDom2|scaffold_4 (75934011-75933823) | |
| 145-312, gnl|oryCun1|scaffold_204330 (24291-24480) | |
| 145-312, gnl|panTro1|chr7 (84651278-84651467) | |
| 145-312, gnl|rheMac2|chr8 (83887121-83887310) | |
| 145-312, gnl|rn3|chr2 (93512639-93512450) | |
| 145-312, gnl|tetNig1|chrUn_random (90004021-90004203) | |
| 145-312, gnl|xenTro1|scaffold_259 (1370159-1369969) | |
| 421-795, gnl|bosTau2|chr9 (14495240-14494864) | |
| 421-795, gnl|canFam2|chr1 (65143594-65143862) | |
| 421-795, gnl|canFam2|chr1 (65143871-65143632) | |
| 421-795, gnl|dasNov1|scaffold_6625 (56207-55962) | |
| 421-795, gnl|dasNov1|scaffold_6625 (55944-56177) | |
| 421-795, gnl|echTel1|scaffold_321356 (38982-39192) | |
| 421-795, gnl|galGal2|chr3 (59667859-59668054) | |
| 421-795, gnl|hg17|chr1 (240113719-240113936) | |
| 421-795, gnl|Hg17|chr6 (123146560-123146919) | |
| 421-795, gnl|hg17|chr8 (11626851-11627107) | |
| 421-795, gnl|loxAfr1|scaffold_26131 (26699-26959) | |
| 421-795, gnl|loxAfr1|scaffold_26131 (26977-26738) | |
| 421-795, gnl|mm7|chr10 (57609699-57609926) | |
| 421-795, gnl|mm7|chr10 (57609928-57609713) | |
| 421-795, gnl|monDom2|scaffold_0 (92295988-92296204) | |
| 421-795, gnl|oryCun1|scaffold_172704 (33984-34211) | |
| 421-795, gnl|oryCun1|scaffold_179359 (43575-43320) | |
| 421-795, gnl|panTro1|chr1 (224108716-224108933) | |
| 421-795, gnl|panTro1|chr7 (12283598-12283854) | |
| 421-795, gnl|rheMac2|chr1 (213475987-213475772) | |
| 421-795, gnl|rheMac2|chr4 (141158816-141158556) | |
| 421-795, gnl|rn3|chr20 (36830012-36829781) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| spc (4.9881) | |
| cbe (2.39234) | |
| ecc (1.49546) | |
| ebs (1.41961) | |
| fco (1.25766) | |
| fcc (0.791139) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| ski (0.29347) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fhi (0.169578) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (4.9881) | |
| cbe (2.39234) | |
| ecc (1.49546) | |
| ebs (1.41961) | |
| fco (1.25766) | |
| fcc (0.791139) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| ski (0.29347) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fhi (0.169578) |