Ss1.1-Pig4-TMW8039H18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGGAGAACTTGGGCTCCGCTCTGCTTTATGAAATATGGGAGACGACAGACCGTTTGTG TGCAATGCCCCGGGCTGTGGACAGAGATTTACAAATGAGGACCACCTGGCAGTTCATAAA CACAAGCATGAGATGACATTGAAATTTGGCCCAGCCCGAACTGACTCAGTCATCATTGCA GATCAAACTCCTACTCCGACTAGATTCCTGAAGAACTGTGAAGAGGTGGGACTCTTCAAT GAACTAGCTAGCTCCTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAAAAAAAG GCTGCTTCTGGGCCCCTTGACATGTCTCTGCCTTCTACACCAGACATCAAAATCAAAGAA GAAGAGCCAGTGGAGGTGGACTCATCCCCACCTGACAGCCCTGCCTCTAGCCCCTGCTCC CCACCACTCAAGCAGAAGGAGGTTGCTCCAAAGCCTGTTGTGATCTCTACTCCCACGCCC ACCATCGTGCGCCCTGGCTCCCTGCCTCTCCACCTGGGCTATGATCCACTTCACCCAACC CTTCCCTCCCCAACCTCTGTCATCACACAAGCTCCACCATCCAACAGGCAGCTGGGGTCT CCCACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGCTG CCAGGGCCTCCGGTACAGATGCCTTCTGTTATATCGCTGGCCAGACCTGTGTCTATGGTG CCCAACATTCCTGGTATCCCTGGCCCACCCGTGAACAGCAGTGGTTCCATTTCTCCCTCT GGCCACCCTATGCCATCAGAAGCCAAGATGAGACTAAAAGCTACCCTAACCCACCAAGTC TCCTCAATCAATGGTGGTTGTGGAATGGTGGTGGGTACTGCCAGCACCATGGTGACGGCT CGTCCAGAGCAAAGCCAGATCCTCATCCAGCACCCTGATGCCCCATCCCCTGCCCAGCCA CAGGTCTCACCAGCCCAGCCCACTCCTAGTACTGGAGGGCGGCGGCGGCGCACAGTGGAT GAAGATCCGGATGAGCGGCGGCAGCGCTTTCTGGAACGCAACCGGGCCGCAGCCTCCCGC TGCCGTCAAAAGCGGAAGCTCTGGGTGTCCTCCCTAGAGAAGAAGGCAGAGGAACTCACT TCTCAGAACATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGGAGAACTTGGGCTCCGCTCTGCTTTATGAAATATGGGAGACGACAGACCGTTTGTG TGCAATGCCCCGGGCTGTGGACAGAGATTTACAAATGAGGACCACCTGGCAGTTCATAAA CACAAGCATGAGATGACATTGAAATTTGGCCCAGCCCGAACTGACTCAGTCATCATTGCA GATCAAACTCCTACTCCGACTAGATTCCTGAAGAACTGTGAAGAGGTGGGACTCTTCAAT GAACTAGCTAGCTCCTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAAAAAAAG GCTGCTTCTGGGCCCCTTGACATGTCTCTGCCTTCTACACCAGACATCAAAATCAAAGAA GAAGAGCCAGTGGAGGTGGACTCATCCCCACCTGACAGCCCTGCCTCTAGCCCCTGCTCC CCACCACTCAAGCAGAAGGAGGTTGCTCCAAAGCCTGTTGTGATCTCTACTCCCACGCCC ACCATCGTGCGCCCTGGCTCCCTGCCTCTCCACCTGGGCTATGATCCACTTCACCCAACC CTTCCCTCCCCAACCTCTGTCATCACACAAGCTCCACCATCCAACAGGCAGCTGGGGTCT CCCACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGCTG CCAGGGCCTCCGGTACAGATGCCTTCTGTTATATCGCTGGCCAGACCTGTGTCTATGGTG CCCAACATTCCTGGTATCCCTGGCCCACCCGTGAACAGCAGTGGTTCCATTTCTCCCTCT GGCCACCCTATGCCATCAGAAGCCAAGATGAGACTAAAAGCTACCCTAACCCACCAAGTC TCCTCAATCAATGGTGGTTGTGGAATGGTGGTGGGTACTGCCAGCACCATGGTGACGGCT CGTCCAGAGCAAAGCCAGATCCTCATCCAGCACCCTGATGCCCCATCCCCTGCCCAGCCA CAGGTCTCACCAGCCCAGCCCACTCCTAGTACTGGAGGGCGGCGGCGGCGCACAGTGGAT GAAGATCCGGATGAGCGGCGGCAGCGCTTTCTGGAACGCAACCGGGCCGCAGCCTCCCGC TGCCGTCAAAAGCGGAAGCTCTGGGTGTCCTCCCTAGAGAAGAAGGCAGAGGAACTCACT TCTCAGAACATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 170-302, - strand, RNAz p=0.962782 | |
| 437-598, - strand, RNAz p=0.857502 | |
| 996-1115, + strand, RNAz p=0.519849 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 170-302, - strand, RNAz p=0.962782 | |
| 437-598, - strand, RNAz p=0.857502 | |
| 996-1115, + strand, RNAz p=0.519849 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 170-302, gnl|bosTau2|chr5 (18919899-18920031) | |
| 170-302, gnl|Hg17|chr12 (52223511-52223379) | |
| 170-302, gnl|Mm7|chr15 (102543747-102543615) | |
| 437-598, gnl|bosTau2|chr5 (18928437-18928598) | |
| 437-598, gnl|canFam2|chr27 (4696103-4695892) | |
| 437-598, gnl|danRer3|chr23 (39572974-39573178) | |
| 437-598, gnl|dasNov1|scaffold_1834 (148367-148582) | |
| 437-598, gnl|echTel1|scaffold_316742 (849-635) | |
| 437-598, gnl|fr1|chrUn (41691037-41691211) | |
| 437-598, gnl|galGal2|chrUn (50152035-50152237) | |
| 437-598, gnl|hg17|chr12 (52214533-52214748) | |
| 437-598, gnl|Hg17|chr12 (52214712-52214551) | |
| 437-598, gnl|loxAfr1|scaffold_1915 (43231-43446) | |
| 437-598, gnl|mm7|chr15 (102537542-102537755) | |
| 437-598, gnl|Mm7|chr15 (102537720-102537559) | |
| 437-598, gnl|panTro1|chr10 (53459667-53459882) | |
| 437-598, gnl|rheMac2|chr11 (50611086-50611301) | |
| 437-598, gnl|rn3|chr7 (141372333-141372546) | |
| 437-598, gnl|tetNig1|chr9 (3273706-3273557) | |
| 437-598, gnl|xenTro1|scaffold_280 (760260-760039) | |
| 682-810, gnl|bosTau2|chr5 (18930247-18930376) | |
| 682-810, gnl|canFam2|chr27 (4698675-4698528) | |
| 682-810, gnl|danRer3|chr23 (39570215-39570368) | |
| 682-810, gnl|dasNov1|scaffold_1834 (146617-146764) | |
| 682-810, gnl|echTel1|scaffold_316742 (3743-3596) | |
| 682-810, gnl|fr1|chrUn (41690655-41690784) | |
| 682-810, gnl|galGal2|chrUn (50150678-50150820) | |
| 682-810, gnl|hg17|chr12 (52212553-52212703) | |
| 682-810, gnl|Hg17|chr12 (52212690-52212561) | |
| 682-810, gnl|loxAfr1|scaffold_1915 (41300-41447) | |
| 682-810, gnl|mm7|chr15 (102533303-102533450) | |
| 682-810, gnl|Mm7|chr15 (102533440-102533311) | |
| 682-810, gnl|oryCun1|scaffold_186816 (44917-45066) | |
| 682-810, gnl|panTro1|chr10 (53457573-53457722) | |
| 682-810, gnl|rheMac2|chr11 (50609422-50609573) | |
| 682-810, gnl|rn3|chr7 (141370301-141370448) | |
| 682-810, gnl|tetNig1|chr9 (3274131-3273999) | |
| 682-810, gnl|xenTro1|scaffold_280 (760849-760708) | |
| 957-1152, gnl|bosTau2|chr5 (18933942-18934137) | |
| 957-1152, gnl|canFam2|chr27 (4702361-4702114) | |
| 957-1152, gnl|danRer3|chr23 (39567238-39567458) | |
| 957-1152, gnl|dasNov1|scaffold_1834 (143749-143993) | |
| 957-1152, gnl|echTel1|scaffold_281296 (11180-11427) | |
| 957-1152, gnl|fr1|chrUn (41689808-41690026) | |
| 957-1152, gnl|galGal2|chrUn (50148794-50149034) | |
| 957-1152, gnl|hg17|chr12 (52204606-52204853) | |
| 957-1152, gnl|Hg17|chr12 (52204819-52204624) | |
| 957-1152, gnl|loxAfr1|scaffold_1915 (38405-38652) | |
| 957-1152, gnl|mm7|chr15 (102526889-102527112) | |
| 957-1152, gnl|Mm7|chr15 (102527101-102526906) | |
| 957-1152, gnl|oryCun1|scaffold_186816 (41195-41442) | |
| 957-1152, gnl|panTro1|chr10 (53449683-53449930) | |
| 957-1152, gnl|rheMac2|chr11 (50599912-50600157) | |
| 957-1152, gnl|rn3|chr7 (141367527-141367758) | |
| 957-1152, gnl|tetNig1|chr9 (3274926-3274709) | |
| 957-1152, gnl|xenTro1|scaffold_280 (763389-763166) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-302, gnl|bosTau2|chr5 (18919899-18920031) | |
| 170-302, gnl|Hg17|chr12 (52223511-52223379) | |
| 170-302, gnl|Mm7|chr15 (102543747-102543615) | |
| 437-598, gnl|bosTau2|chr5 (18928437-18928598) | |
| 437-598, gnl|canFam2|chr27 (4696103-4695892) | |
| 437-598, gnl|danRer3|chr23 (39572974-39573178) | |
| 437-598, gnl|dasNov1|scaffold_1834 (148367-148582) | |
| 437-598, gnl|echTel1|scaffold_316742 (849-635) | |
| 437-598, gnl|fr1|chrUn (41691037-41691211) | |
| 437-598, gnl|galGal2|chrUn (50152035-50152237) | |
| 437-598, gnl|hg17|chr12 (52214533-52214748) | |
| 437-598, gnl|Hg17|chr12 (52214712-52214551) | |
| 437-598, gnl|loxAfr1|scaffold_1915 (43231-43446) | |
| 437-598, gnl|mm7|chr15 (102537542-102537755) | |
| 437-598, gnl|Mm7|chr15 (102537720-102537559) | |
| 437-598, gnl|panTro1|chr10 (53459667-53459882) | |
| 437-598, gnl|rheMac2|chr11 (50611086-50611301) | |
| 437-598, gnl|rn3|chr7 (141372333-141372546) | |
| 437-598, gnl|tetNig1|chr9 (3273706-3273557) | |
| 437-598, gnl|xenTro1|scaffold_280 (760260-760039) | |
| 682-810, gnl|bosTau2|chr5 (18930247-18930376) | |
| 682-810, gnl|canFam2|chr27 (4698675-4698528) | |
| 682-810, gnl|danRer3|chr23 (39570215-39570368) | |
| 682-810, gnl|dasNov1|scaffold_1834 (146617-146764) | |
| 682-810, gnl|echTel1|scaffold_316742 (3743-3596) | |
| 682-810, gnl|fr1|chrUn (41690655-41690784) | |
| 682-810, gnl|galGal2|chrUn (50150678-50150820) | |
| 682-810, gnl|hg17|chr12 (52212553-52212703) | |
| 682-810, gnl|Hg17|chr12 (52212690-52212561) | |
| 682-810, gnl|loxAfr1|scaffold_1915 (41300-41447) | |
| 682-810, gnl|mm7|chr15 (102533303-102533450) | |
| 682-810, gnl|Mm7|chr15 (102533440-102533311) | |
| 682-810, gnl|oryCun1|scaffold_186816 (44917-45066) | |
| 682-810, gnl|panTro1|chr10 (53457573-53457722) | |
| 682-810, gnl|rheMac2|chr11 (50609422-50609573) | |
| 682-810, gnl|rn3|chr7 (141370301-141370448) | |
| 682-810, gnl|tetNig1|chr9 (3274131-3273999) | |
| 682-810, gnl|xenTro1|scaffold_280 (760849-760708) | |
| 957-1152, gnl|bosTau2|chr5 (18933942-18934137) | |
| 957-1152, gnl|canFam2|chr27 (4702361-4702114) | |
| 957-1152, gnl|danRer3|chr23 (39567238-39567458) | |
| 957-1152, gnl|dasNov1|scaffold_1834 (143749-143993) | |
| 957-1152, gnl|echTel1|scaffold_281296 (11180-11427) | |
| 957-1152, gnl|fr1|chrUn (41689808-41690026) | |
| 957-1152, gnl|galGal2|chrUn (50148794-50149034) | |
| 957-1152, gnl|hg17|chr12 (52204606-52204853) | |
| 957-1152, gnl|Hg17|chr12 (52204819-52204624) | |
| 957-1152, gnl|loxAfr1|scaffold_1915 (38405-38652) | |
| 957-1152, gnl|mm7|chr15 (102526889-102527112) | |
| 957-1152, gnl|Mm7|chr15 (102527101-102526906) | |
| 957-1152, gnl|oryCun1|scaffold_186816 (41195-41442) | |
| 957-1152, gnl|panTro1|chr10 (53449683-53449930) | |
| 957-1152, gnl|rheMac2|chr11 (50599912-50600157) | |
| 957-1152, gnl|rn3|chr7 (141367527-141367758) | |
| 957-1152, gnl|tetNig1|chr9 (3274926-3274709) | |
| 957-1152, gnl|xenTro1|scaffold_280 (763389-763166) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) |