Non-Coding RNA Search

Ss1.1-Pig4-TMW8039H23.3

Sequence:


               
               ACTCGGCCGCTCTGGGCGTGCGTGGTTCTCTTTGCTGTAGTCTCCGCTTGTCCTGGAGCT
CTTGCACTCCGACCCGCGCTCACCATGCTGGCGCTGCGCAGCAGTCCCCGCTTGCTCCGT
CTGCTCTCCGGCCCGCGCTCCGCGCCGCTGCGCCTCTCCGCAACCCGCGCCTGCAGCAGC
GGCGGCGACTCCGGTGACCCGTCCTCTTCCGCCAGGAACCCGCTTGTGTACCTGGACGTG
GGCGCGGACGGGCAGCCGCTCGGCCGCGTGGTTCTGGAGCTGAAGGCAGATGTCGTCCCA
AAGACAGCAGAGAACTTCAGAGCCCTGTGCACCGGGGAGAAGGGCTTCGGCTACAAAGGC
TCCACGTTTCACAGAGTCATTCCATCCTTCATGTGCCAGGCCGGCGACTTCACCAACCAC
AACGGCACAGGAGGGAAGTCCATCTACGGAAGCCGTTTTCCTGACGAGAACTTCAAACTC
AAGCACGTGGGGCCCGGTGTCCTGTCCATGGCAAATGCAGGCCCCAACACCAACGGCTCC
CAGTTCTTCATTTGCACCATAAAGACAGACTGGCTGGATGGCAAACACGTTGTGTTTGGC
CATGTCAAAGAGGGCATGGATGTTGTGAAGAAAATAGAATCTTTCGGCTCCAAGAGTGGG
AAGACATCCAAGAAAATTGTCATCACAGACTGTGGCCAGTTGAGCTAACCTGCAGTGGCC
AGGGCGCTAGGCTGGTGGCAGCTGCAGCACAGGAGTGGACTCACCCAGGTGGCTGCCTCA
GACTCCCAGCCAGGGGCCCTTGGAGTTGCCTGGGCTTGCTCCACCGTCTCTGTGCTCCAG
GAAGGCCTCAGATGAATATCAAACCTCACAGGACACTTCAGGCTGCTTCCCCAGTGCTTG
GCCTTCCTCAGCACCCCGTCCCTGGACACCCGTCATGGCTACTGTCACCGCTCCTTGTCT
GATTGCCTGACCCAAGTTCACCTGTGCCTTGGACATCAGGAGTGATGATGGAATAGCTCT
GAGGGTAGTTTCTACCTTTTCTTTGACCAAGGGGGGAAGCCGGTTCCTGTAAAGGGCTGT
CGTATCTGTTTAATGTCATCTCCCTAATTGGAATAATTTAACTAATAAGACTGCCTGGAG
TTGAAGCTGAGACACCAACTACACCAGGCTGTGGTGTGACCTGAGTTTGTGGCACAGGCT
ACAGACCCAGAGCTTAGCCTTTGGAGCACGATCCAGGCTTTTGTGAAGGTCCTGGGGCTG
ATAACTTTTATCCTAGCCACTGTGAATCCCACTGGTCTGCTGCTCTTGGATTTGGGGAGA
ACCCCTGGGGGTAGAAGCAGCTGAACCTGGGAACAGACCCACTGCAAGCTGTGCCTAGTC
AATGTGAATTCCCGAGTTGAAAACAAATGGTCTCAAAGTGCCGTGTGCTCTGGAAGGAAG
TCATTGCGTATTTCCTGGTGGGCTTTGATTTTTTTTTTTTTTCTGTGTGTTTAATATTAA
ATCTACTGATTATGAACACAGTACACTTCTGGAACACCTTAAATGTGAAAATAAATCCTA
TTTTCTATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCGGCCGCTCTGGGCGTGCGTGGTTCTCTTTGCTGTAGTCTCCGCTTGTCCTGGAGCT
CTTGCACTCCGACCCGCGCTCACCATGCTGGCGCTGCGCAGCAGTCCCCGCTTGCTCCGT
CTGCTCTCCGGCCCGCGCTCCGCGCCGCTGCGCCTCTCCGCAACCCGCGCCTGCAGCAGC
GGCGGCGACTCCGGTGACCCGTCCTCTTCCGCCAGGAACCCGCTTGTGTACCTGGACGTG
GGCGCGGACGGGCAGCCGCTCGGCCGCGTGGTTCTGGAGCTGAAGGCAGATGTCGTCCCA
AAGACAGCAGAGAACTTCAGAGCCCTGTGCACCGGGGAGAAGGGCTTCGGCTACAAAGGC
TCCACGTTTCACAGAGTCATTCCATCCTTCATGTGCCAGGCCGGCGACTTCACCAACCAC
AACGGCACAGGAGGGAAGTCCATCTACGGAAGCCGTTTTCCTGACGAGAACTTCAAACTC
AAGCACGTGGGGCCCGGTGTCCTGTCCATGGCAAATGCAGGCCCCAACACCAACGGCTCC
CAGTTCTTCATTTGCACCATAAAGACAGACTGGCTGGATGGCAAACACGTTGTGTTTGGC
CATGTCAAAGAGGGCATGGATGTTGTGAAGAAAATAGAATCTTTCGGCTCCAAGAGTGGG
AAGACATCCAAGAAAATTGTCATCACAGACTGTGGCCAGTTGAGCTAACCTGCAGTGGCC
AGGGCGCTAGGCTGGTGGCAGCTGCAGCACAGGAGTGGACTCACCCAGGTGGCTGCCTCA
GACTCCCAGCCAGGGGCCCTTGGAGTTGCCTGGGCTTGCTCCACCGTCTCTGTGCTCCAG
GAAGGCCTCAGATGAATATCAAACCTCACAGGACACTTCAGGCTGCTTCCCCAGTGCTTG
GCCTTCCTCAGCACCCCGTCCCTGGACACCCGTCATGGCTACTGTCACCGCTCCTTGTCT
GATTGCCTGACCCAAGTTCACCTGTGCCTTGGACATCAGGAGTGATGATGGAATAGCTCT
GAGGGTAGTTTCTACCTTTTCTTTGACCAAGGGGGGAAGCCGGTTCCTGTAAAGGGCTGT
CGTATCTGTTTAATGTCATCTCCCTAATTGGAATAATTTAACTAATAAGACTGCCTGGAG
TTGAAGCTGAGACACCAACTACACCAGGCTGTGGTGTGACCTGAGTTTGTGGCACAGGCT
ACAGACCCAGAGCTTAGCCTTTGGAGCACGATCCAGGCTTTTGTGAAGGTCCTGGGGCTG
ATAACTTTTATCCTAGCCACTGTGAATCCCACTGGTCTGCTGCTCTTGGATTTGGGGAGA
ACCCCTGGGGGTAGAAGCAGCTGAACCTGGGAACAGACCCACTGCAAGCTGTGCCTAGTC
AATGTGAATTCCCGAGTTGAAAACAAATGGTCTCAAAGTGCCGTGTGCTCTGGAAGGAAG
TCATTGCGTATTTCCTGGTGGGCTTTGATTTTTTTTTTTTTTCTGTGTGTTTAATATTAA
ATCTACTGATTATGAACACAGTACACTTCTGGAACACCTTAAATGTGAAAATAAATCCTA
TTTTCTATAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9N0U4_MACMU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9N0U4_MACMU

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               376-495, + strand, RNAz p=0.58048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-495, + strand, RNAz p=0.58048

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               217-698, gnl|bosTau2|chr10 (14393045-14393526)
               

               
               217-698, gnl|Hg17|chr21 (19151974-19152455)
               

               
               217-698, gnl|Mm7|chr9 (96537307-96537788)
               


               
               828-1572, gnl|bosTau2|chr28 (27905475-27906239)
               

               
               828-1572, gnl|Hg17|chr10 (80783719-80784479)
               

               
               828-1572, gnl|Mm7|chr14 (23370856-23371654)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-698, gnl|bosTau2|chr10 (14393045-14393526)
               

               
               217-698, gnl|Hg17|chr21 (19151974-19152455)
               

               
               217-698, gnl|Mm7|chr9 (96537307-96537788)
               


               
               828-1572, gnl|bosTau2|chr28 (27905475-27906239)
               

               
               828-1572, gnl|Hg17|chr10 (80783719-80784479)
               

               
               828-1572, gnl|Mm7|chr14 (23370856-23371654)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               hea (0.613497)
               

               
               sme (0.305437)
               

               
               ute (0.265569)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.613497)
               

               
               sme (0.305437)
               

               
               ute (0.265569)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	217-698, gnl\|bosTau2\|chr10 (14393045-14393526)
	217-698, gnl\|Hg17\|chr21 (19151974-19152455)
	217-698, gnl\|Mm7\|chr9 (96537307-96537788)

	828-1572, gnl\|bosTau2\|chr28 (27905475-27906239)
	828-1572, gnl\|Hg17\|chr10 (80783719-80784479)
	828-1572, gnl\|Mm7\|chr14 (23370856-23371654)

	hea (0.613497)
	sme (0.305437)
	ute (0.265569)
	cbe (0.239234)
	ece (0.229305)
	ldo (0.194005)
	nlu (0.191681)
	cut (0.169924)
	cki (0.165235)
	lun (0.150489)
	fat (0.147427)
	pty (0.142714)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	kid (0.129735)
	cly (0.120642)
	pgl (0.118483)
	nbm (0.0993246)
	eje (0.0988338)