Non-Coding RNA Search

Ss1.1-Pig4-TMW8039I01.3

Sequence:


               
               CGCCGGAGTGAATTGATCCGGGAGTTGAAGAGGGCTCCAAAGGTGGGAAGTGAAGTCAGT
CCCTCAGTTGCCGGACAGTATATGTTTTGTGCAGTATTCTTTTATCACAATAAAGAGAAG
AAAGACTGCAGTGAATGAAGATTCCTCTGCATTTTAGCACTGCTTTTTCTACTGTAGTTG
GCTTTTGAATGAGGATGACAATGGAAGAGATGAAGAATGAAGCTGAGACCACTTCCATGG
TTTCTATGCCTCTCTATGCAGTCATGTATCCTGTGTTTAATGAGCTAGAGCGAGTAAATC
TGTCTGCAGCTCAGACACTGAGAGCAGCTTTCATTAAGGCTGAAAAAGAAAATCCAGGAC
TCACACAAGACATCATTATGAAAATTTTAGAGAAAAAAAGTGTAGAAGTCAACTTCACGG
AGTCCCTTCTTCGAATGGCAGCTGATGATGTAGAAGAGTATATGATTGAACGACCAGAGC
CAGAATTCCAGGACCTAAACGAAAAAGCACGAGCACTTAAACAAATTCTCAGTAAGATCC
CAGATGAGATCAATGACAGAGTGAGGTTTCTGCAGACAATCAAGGATATAGCCAGTGCAA
TAAAAGAACTTCTTGATACAGTGAACAATGTCTTCAAGAAATACCAATACCAGAACCGCA
GAGCACTTGAACACCAAAAGAAAGAATTTGTAAAATACTCCAAAAGTTTCAGTGATACTC
TGAAAACCTATTTTAAAGATGGCAAGGCAATAAATGTGTTCATAAGTGCCAACCGACTAA
TTCATCAAACCAACTTGATACTTCAGACCTTCAAAACTGTGGCCTGAAAGTTGTATATGT
TAAGAGATGTACTTCTCAGTGGCAGTATTGGACTGCCTTTATCTGTAAATTTTAAAGTTT
GACTGTATAAATTATCAGTCCCTCCTGAAGGGATCTAATAATCCAGGATGTTGAATGGGA
TTATTGCCATCTTACACCATATTTTTGTAAAATGTAGCTTAATCATAATCTCACACTGAA
GATTTTGCATCACTTTTGCTATTATCATTCTTTTAAGAATTATAAGCCAAAAGAATTTAC
GCCTTAATGTGTCATTATATAACATTCCTTAAAAGAATTGTAAATATTGGTGTTTGTTTC
TGACATTTTAACTTGAAAGCGATATGCTGCAAGATAATGTATTTAACAATATTTGGTGGC
AAATATTCAATAAATAGTTTACATCTGTTAAAAAAATCTTTACTTGAAAAAAATGCATAT
ATATATGTGAATATATATATATGATCAGAAGACCAAGACGACTTGGTGTAATGTCTAAGG
AACTTCTAACAGGAGCTTATTAGCAGTTTATCAGATAATAAAGCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGGAGTGAATTGATCCGGGAGTTGAAGAGGGCTCCAAAGGTGGGAAGTGAAGTCAGT
CCCTCAGTTGCCGGACAGTATATGTTTTGTGCAGTATTCTTTTATCACAATAAAGAGAAG
AAAGACTGCAGTGAATGAAGATTCCTCTGCATTTTAGCACTGCTTTTTCTACTGTAGTTG
GCTTTTGAATGAGGATGACAATGGAAGAGATGAAGAATGAAGCTGAGACCACTTCCATGG
TTTCTATGCCTCTCTATGCAGTCATGTATCCTGTGTTTAATGAGCTAGAGCGAGTAAATC
TGTCTGCAGCTCAGACACTGAGAGCAGCTTTCATTAAGGCTGAAAAAGAAAATCCAGGAC
TCACACAAGACATCATTATGAAAATTTTAGAGAAAAAAAGTGTAGAAGTCAACTTCACGG
AGTCCCTTCTTCGAATGGCAGCTGATGATGTAGAAGAGTATATGATTGAACGACCAGAGC
CAGAATTCCAGGACCTAAACGAAAAAGCACGAGCACTTAAACAAATTCTCAGTAAGATCC
CAGATGAGATCAATGACAGAGTGAGGTTTCTGCAGACAATCAAGGATATAGCCAGTGCAA
TAAAAGAACTTCTTGATACAGTGAACAATGTCTTCAAGAAATACCAATACCAGAACCGCA
GAGCACTTGAACACCAAAAGAAAGAATTTGTAAAATACTCCAAAAGTTTCAGTGATACTC
TGAAAACCTATTTTAAAGATGGCAAGGCAATAAATGTGTTCATAAGTGCCAACCGACTAA
TTCATCAAACCAACTTGATACTTCAGACCTTCAAAACTGTGGCCTGAAAGTTGTATATGT
TAAGAGATGTACTTCTCAGTGGCAGTATTGGACTGCCTTTATCTGTAAATTTTAAAGTTT
GACTGTATAAATTATCAGTCCCTCCTGAAGGGATCTAATAATCCAGGATGTTGAATGGGA
TTATTGCCATCTTACACCATATTTTTGTAAAATGTAGCTTAATCATAATCTCACACTGAA
GATTTTGCATCACTTTTGCTATTATCATTCTTTTAAGAATTATAAGCCAAAAGAATTTAC
GCCTTAATGTGTCATTATATAACATTCCTTAAAAGAATTGTAAATATTGGTGTTTGTTTC
TGACATTTTAACTTGAAAGCGATATGCTGCAAGATAATGTATTTAACAATATTTGGTGGC
AAATATTCAATAAATAGTTTACATCTGTTAAAAAAATCTTTACTTGAAAAAAATGCATAT
ATATATGTGAATATATATATATGATCAGAAGACCAAGACGACTTGGTGTAATGTCTAAGG
AACTTCTAACAGGAGCTTATTAGCAGTTTATCAGATAATAAAGCAACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|31560391|ref|NP_062719.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31560391|ref|NP_062719.2|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               620-730, - strand, RNAz p=0.639712
               

               
               767-1006, - strand, RNAz p=0.839942
               

               
               1247-1365, - strand, RNAz p=0.999723

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-730, - strand, RNAz p=0.639712
               

               
               767-1006, - strand, RNAz p=0.839942
               

               
               1247-1365, - strand, RNAz p=0.999723

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               129-1365, gnl|bosTau2|chr18 (8726806-8728021)
               

               
               129-1365, gnl|Hg17|chr3 (168897618-168884249)
               

               
               129-1365, gnl|Mm7|chr2 (156088758-156087526)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-1365, gnl|bosTau2|chr18 (8726806-8728021)
               

               
               129-1365, gnl|Hg17|chr3 (168897618-168884249)
               

               
               129-1365, gnl|Mm7|chr2 (156088758-156087526)

Expressed library(ies): 35 entry(ies)

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Expressed library(ies): 35 entry(ies)

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               lin (1.01922)
               

               
               ret (0.7724)
               

               
               nco (0.646935)
               

               
               fco (0.628832)
               

               
               sme (0.610874)
               

               
               spl (0.572738)
               

               
               rec (0.519211)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               tra (0.369276)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.01922)
               

               
               ret (0.7724)
               

               
               nco (0.646935)
               

               
               fco (0.628832)
               

               
               sme (0.610874)
               

               
               spl (0.572738)
               

               
               rec (0.519211)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               tra (0.369276)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	620-730, - strand, RNAz p=0.639712
	767-1006, - strand, RNAz p=0.839942
	1247-1365, - strand, RNAz p=0.999723

	129-1365, gnl\|bosTau2\|chr18 (8726806-8728021)
	129-1365, gnl\|Hg17\|chr3 (168897618-168884249)
	129-1365, gnl\|Mm7\|chr2 (156088758-156087526)

	lin (1.01922)
	ret (0.7724)
	nco (0.646935)
	fco (0.628832)
	sme (0.610874)
	spl (0.572738)
	rec (0.519211)
	aor (0.390549)
	col (0.390016)
	tra (0.369276)
	tbr (0.308356)
	ski (0.29347)
	liv (0.292569)
	lnt (0.284616)
	cbl (0.229595)
	tes (0.207814)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	fat (0.147427)
	hyp (0.142837)
	csk (0.140746)
	nca (0.136874)
	lyg (0.133103)
	nmm (0.132802)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	med (0.116252)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)