Non-Coding RNA Search

Ss1.1-Pig4-TMW8039I09.3

Sequence:


               
               CCCGCCCGGCCCGGCTCAGCCTGCTGCGGCGGTGCCTCCTTCCTTCCTTCTTCCCTCGCT
CTCTTTCTCGCCCGCCCGCGCCTTCCCTGTCTGCCTGCGTCACCGCGGCCGCCATGGCTG
AGAACGGCGAGAGCAGCGGCCCCCCGCGCCCCTCCCGCGGCTCTGCTGCGGCGCAAGGCC
CGGCCTCTGCCCCGGCGGAGCCTAAAATCATCAAAGTCACTGTGAAGACCCCCAAAGAGA
AAGAGGAGTTCGCAGTGCCCGAGAACAGCTCAGTCCAACAGTTTAAAGAAGCGATTTCGA
AACGCTTCAAATCCCAAACCGATCAGCTAGTGCTGATTTTTGCCGGAAAAATCTTAAAAG
ATCAAGATACCTTGATCCAGCATGGCATCCATGATGGACTGACTGTTCACCTTGTCATCA
AAAGCCAGAACCGACCTCAGGGTCAGTCCACACAGCCCAATAGTGCCGCGGGAACTAATA
CTACCACCGCGTCGACTCCCAGGAGTAACTCCACACCTATTTCCACAAATAGCAACCCGT
TTGGTTTGGGGAGCCTGGGAGGACTTGCAGGCCTTAGCAGCTTGGGCTTAAGCTCGACCA
ACTTCTCTGAGCTCCAGAACCAGATGCAGCAGCAGCTCCTGTCCAGCCCTGAGATGATGA
TCCAAATCATGGAAAATCCCTTTGTTCAGAGCATGCTTTCAAATCCTGATCTGATGAGGC
AGCTCATTATGGCCAATCCACAGATGCAACAATTAATTCAAAGAAACCCAGAAATAAGTC
ACCTGCTTAACAACCCATATATAATGAGGCAGACCCTCGAAATCGCCAGGAATCCAGCTA
TGATGCAAGAGATGATGAGAAATCAAGACCTGGCTCTCAGCAATCTCGAAAGCATCCCAG
GTGGCTACAATGCTTTACGGCGCATGTATACTGACATTCAAGAACCCATGCTGAATGCCG
CACAGGAGCAGTTTGGGGGTAATCCGTTTGCCTCGGTGGGGAACAGTTCCTCTTCTGGGG
AAGGTACGCAGCCTTCTCGCACAGAAAATCGAGATCCACTACCCAATCCATGGGCACCGC
CACCGGCTACCCAGAGTTCTGCGACCACTAGCACAACAACTAGCAGTGGCAGTGGATCTG
GCAGTAGCTCCAGCAGTGCTACGGGGAACACAGTTGCTGCAGCCAATTATGTCGCTAGCA
TCTTTAGCACCCCAGGAATGCAGAGCTTGCTGCAACAGATAACCGAAAACCCCCAGCTGA
TCCAGAATATGCTGTCTGCGCCCTATATGAGAAGCATGATGCAGTCGCTTAGCCAGAATC
CAGATTTGGCTGCACAGATGATGCTGAATAGCCCTGTGTTTACTGCAAATCCTCAGCTGC
AGGAGCAGATGCGTCCACAGCTCCCTGCTTTCCTGCAGCAGATGCAGAATCCAGACACAC
TGTCAGCCATGTCAAACCCAAGAGCAATGCAGGCTTTAATGCAGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCCCGGCCCGGCTCAGCCTGCTGCGGCGGTGCCTCCTTCCTTCCTTCTTCCCTCGCT
CTCTTTCTCGCCCGCCCGCGCCTTCCCTGTCTGCCTGCGTCACCGCGGCCGCCATGGCTG
AGAACGGCGAGAGCAGCGGCCCCCCGCGCCCCTCCCGCGGCTCTGCTGCGGCGCAAGGCC
CGGCCTCTGCCCCGGCGGAGCCTAAAATCATCAAAGTCACTGTGAAGACCCCCAAAGAGA
AAGAGGAGTTCGCAGTGCCCGAGAACAGCTCAGTCCAACAGTTTAAAGAAGCGATTTCGA
AACGCTTCAAATCCCAAACCGATCAGCTAGTGCTGATTTTTGCCGGAAAAATCTTAAAAG
ATCAAGATACCTTGATCCAGCATGGCATCCATGATGGACTGACTGTTCACCTTGTCATCA
AAAGCCAGAACCGACCTCAGGGTCAGTCCACACAGCCCAATAGTGCCGCGGGAACTAATA
CTACCACCGCGTCGACTCCCAGGAGTAACTCCACACCTATTTCCACAAATAGCAACCCGT
TTGGTTTGGGGAGCCTGGGAGGACTTGCAGGCCTTAGCAGCTTGGGCTTAAGCTCGACCA
ACTTCTCTGAGCTCCAGAACCAGATGCAGCAGCAGCTCCTGTCCAGCCCTGAGATGATGA
TCCAAATCATGGAAAATCCCTTTGTTCAGAGCATGCTTTCAAATCCTGATCTGATGAGGC
AGCTCATTATGGCCAATCCACAGATGCAACAATTAATTCAAAGAAACCCAGAAATAAGTC
ACCTGCTTAACAACCCATATATAATGAGGCAGACCCTCGAAATCGCCAGGAATCCAGCTA
TGATGCAAGAGATGATGAGAAATCAAGACCTGGCTCTCAGCAATCTCGAAAGCATCCCAG
GTGGCTACAATGCTTTACGGCGCATGTATACTGACATTCAAGAACCCATGCTGAATGCCG
CACAGGAGCAGTTTGGGGGTAATCCGTTTGCCTCGGTGGGGAACAGTTCCTCTTCTGGGG
AAGGTACGCAGCCTTCTCGCACAGAAAATCGAGATCCACTACCCAATCCATGGGCACCGC
CACCGGCTACCCAGAGTTCTGCGACCACTAGCACAACAACTAGCAGTGGCAGTGGATCTG
GCAGTAGCTCCAGCAGTGCTACGGGGAACACAGTTGCTGCAGCCAATTATGTCGCTAGCA
TCTTTAGCACCCCAGGAATGCAGAGCTTGCTGCAACAGATAACCGAAAACCCCCAGCTGA
TCCAGAATATGCTGTCTGCGCCCTATATGAGAAGCATGATGCAGTCGCTTAGCCAGAATC
CAGATTTGGCTGCACAGATGATGCTGAATAGCCCTGTGTTTACTGCAAATCCTCAGCTGC
AGGAGCAGATGCGTCCACAGCTCCCTGCTTTCCTGCAGCAGATGCAGAATCCAGACACAC
TGTCAGCCATGTCAAACCCAAGAGCAATGCAGGCTTTAATGCAGATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10241759|emb|CAC09446.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10241759|emb|CAC09446.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               238-474, - strand, RNAz p=0.990174
               

               
               1036-1186, - strand, RNAz p=0.99565

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-474, - strand, RNAz p=0.990174
               

               
               1036-1186, - strand, RNAz p=0.99565

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1488, gnl|bosTau2|chrX (29827979-29829464)
               

               
               1-1488, gnl|Hg17|chrX (56473213-56474702)
               

               
               1-1488, gnl|Mm7|chrX (148257030-148258546)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1488, gnl|bosTau2|chrX (29827979-29829464)
               

               
               1-1488, gnl|Hg17|chrX (56473213-56474702)
               

               
               1-1488, gnl|Mm7|chrX (148257030-148258546)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	238-474, - strand, RNAz p=0.990174
	1036-1186, - strand, RNAz p=0.99565

	1-1488, gnl\|bosTau2\|chrX (29827979-29829464)
	1-1488, gnl\|Hg17\|chrX (56473213-56474702)
	1-1488, gnl\|Mm7\|chrX (148257030-148258546)