Ss1.1-Pig4-TMW8039I18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAACTGCTCTTCCTAATTGGGATCAACCGAACAGACCAACCAATCGCCTGTGCAGTTT TTGCTGCCCTCCTGCATTTCTTCTTCTTGGCTGCCTTCACCTGGATGTTCCTGGAGGGAG TGCAGCTCTACATCATGCTGGTGGAGGTTTTTGAGAGTGAACATTCACGTAGGAAATACT TTTACCTGGTCGGCTATGGGATGCCTGCCCTCATTGTGGCTGTGTCAGCTGCAGTAGACT ACAGGAGTTATGGAACAGATAAAGTATGTTGGCTCCGACTTGACACCTACTTCATTTGGA GTTTTATAGGACCAGCGACCTTGATAATTATGCTTAATGTAATCTTCCTTGGGATTGCTT TGTATAAAATGTTTCATCACACTGCCATTCTGAAACCTGAATCTGGCTGCCTTGATAATA TCAAGTCATGGGTTATAGGTGCAATAGCTCTTCTCTGCCTATTAGGATTGACCTGGGCCT TTGGACTCATGTATATTAATGAAAGCACAGTCATCATGGCGTATCTCTTCACCATTTTCA ATTCTCTACAGGGAATGTTTATATTCATTTTCCACTGTGTCCTACAAAAGAAGGTACGGA AAGAGTATGGGAAGTGCCTGCGAACGCACTGTTGTAGTGGCAAAAGTACAGAGAGTTCCA TTGGCTCAGGGAAAACGTCTGGTTCTCGAACTCCTGGGCGCTACTCCACAGGCTCACAGA GCCGAATTCGTAGAATGTGGAATGACACGGTCCGAAAGCAGTCAGAGTCTTCCTTCATTA CTGGAGATATAAACAGTTCAGCATCACTCAACAGAGAGGGGCTTCTGAACAATGCCAGGG ATACAAGTGTCATGGATACTCTACCACTGAATGGTAACCATGGCAATAGTTACAGCATTG CCAGCGGGGAATACCTGAGCAACTGTGTGCAAATCATAGACCGTGGCTATAACCATAACG AGACCGCCCTAGAGAAAAAGATTCTGAAGGAACTCACTTCCAACTATATCCCGTCTTACC TGAATAACCACGAGCGCTCCAGCAGCGAACAGAACCGGAATCTGATGAACAAGCTGGTGA ATAACCTGGGCAGTGGGAGTGAAGATAATGCCATTGTCCTGGATGATGCCACCTCCTTTA ACCATGAAGAGAGTCTGGGCCTGGAACTTATTCATGAGGAATCAGATGCTCCTTTGCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAACTGCTCTTCCTAATTGGGATCAACCGAACAGACCAACCAATCGCCTGTGCAGTTT TTGCTGCCCTCCTGCATTTCTTCTTCTTGGCTGCCTTCACCTGGATGTTCCTGGAGGGAG TGCAGCTCTACATCATGCTGGTGGAGGTTTTTGAGAGTGAACATTCACGTAGGAAATACT TTTACCTGGTCGGCTATGGGATGCCTGCCCTCATTGTGGCTGTGTCAGCTGCAGTAGACT ACAGGAGTTATGGAACAGATAAAGTATGTTGGCTCCGACTTGACACCTACTTCATTTGGA GTTTTATAGGACCAGCGACCTTGATAATTATGCTTAATGTAATCTTCCTTGGGATTGCTT TGTATAAAATGTTTCATCACACTGCCATTCTGAAACCTGAATCTGGCTGCCTTGATAATA TCAAGTCATGGGTTATAGGTGCAATAGCTCTTCTCTGCCTATTAGGATTGACCTGGGCCT TTGGACTCATGTATATTAATGAAAGCACAGTCATCATGGCGTATCTCTTCACCATTTTCA ATTCTCTACAGGGAATGTTTATATTCATTTTCCACTGTGTCCTACAAAAGAAGGTACGGA AAGAGTATGGGAAGTGCCTGCGAACGCACTGTTGTAGTGGCAAAAGTACAGAGAGTTCCA TTGGCTCAGGGAAAACGTCTGGTTCTCGAACTCCTGGGCGCTACTCCACAGGCTCACAGA GCCGAATTCGTAGAATGTGGAATGACACGGTCCGAAAGCAGTCAGAGTCTTCCTTCATTA CTGGAGATATAAACAGTTCAGCATCACTCAACAGAGAGGGGCTTCTGAACAATGCCAGGG ATACAAGTGTCATGGATACTCTACCACTGAATGGTAACCATGGCAATAGTTACAGCATTG CCAGCGGGGAATACCTGAGCAACTGTGTGCAAATCATAGACCGTGGCTATAACCATAACG AGACCGCCCTAGAGAAAAAGATTCTGAAGGAACTCACTTCCAACTATATCCCGTCTTACC TGAATAACCACGAGCGCTCCAGCAGCGAACAGAACCGGAATCTGATGAACAAGCTGGTGA ATAACCTGGGCAGTGGGAGTGAAGATAATGCCATTGTCCTGGATGATGCCACCTCCTTTA ACCATGAAGAGAGTCTGGGCCTGGAACTTATTCATGAGGAATCAGATGCTCCTTTGCTGC |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 45-268, gnl|bosTau2|chr6 (22624332-22624555) | |
| 45-268, gnl|Hg17|chr4 (62677867-62678090) | |
| 45-268, gnl|Mm7|chr5 (81660240-81660463) | |
| 422-596, gnl|bosTau2|chr6 (22660244-22660418) | |
| 422-596, gnl|canFam2|chr13 (56435022-56435206) | |
| 422-596, gnl|danRer3|chr1 (20259769-20259585) | |
| 422-596, gnl|dasNov1|scaffold_1098 (102980-103164) | |
| 422-596, gnl|echTel1|scaffold_310437 (4086-4265) | |
| 422-596, gnl|fr1|chrUn (84170124-84169947) | |
| 422-596, gnl|galGal2|chr4 (48917639-48917823) | |
| 422-596, gnl|hg17|chr4 (62725921-62726105) | |
| 422-596, gnl|Hg17|chr4 (62725923-62726097) | |
| 422-596, gnl|loxAfr1|scaffold_5855 (20585-20400) | |
| 422-596, gnl|mm7|chr5 (81694193-81694377) | |
| 422-596, gnl|Mm7|chr5 (81694195-81694369) | |
| 422-596, gnl|monDom2|scaffold_26 (26733277-26733461) | |
| 422-596, gnl|oryCun1|scaffold_156503 (10475-10724) | |
| 422-596, gnl|panTro1|chr3 (83875587-83875403) | |
| 422-596, gnl|rheMac2|chr5 (67390972-67390788) | |
| 422-596, gnl|rn3|chr14 (28422576-28422392) | |
| 422-596, gnl|tetNig1|chrUn_random (56103330-56103154) | |
| 422-596, gnl|xenTro1|scaffold_650 (561632-561455) | |
| 815-1200, gnl|bosTau2|chr6 (22714537-22714919) | |
| 815-1200, gnl|Hg17|chr4 (62764591-62764973) | |
| 815-1200, gnl|Mm7|chr5 (81727833-81728215) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-268, gnl|bosTau2|chr6 (22624332-22624555) | |
| 45-268, gnl|Hg17|chr4 (62677867-62678090) | |
| 45-268, gnl|Mm7|chr5 (81660240-81660463) | |
| 422-596, gnl|bosTau2|chr6 (22660244-22660418) | |
| 422-596, gnl|canFam2|chr13 (56435022-56435206) | |
| 422-596, gnl|danRer3|chr1 (20259769-20259585) | |
| 422-596, gnl|dasNov1|scaffold_1098 (102980-103164) | |
| 422-596, gnl|echTel1|scaffold_310437 (4086-4265) | |
| 422-596, gnl|fr1|chrUn (84170124-84169947) | |
| 422-596, gnl|galGal2|chr4 (48917639-48917823) | |
| 422-596, gnl|hg17|chr4 (62725921-62726105) | |
| 422-596, gnl|Hg17|chr4 (62725923-62726097) | |
| 422-596, gnl|loxAfr1|scaffold_5855 (20585-20400) | |
| 422-596, gnl|mm7|chr5 (81694193-81694377) | |
| 422-596, gnl|Mm7|chr5 (81694195-81694369) | |
| 422-596, gnl|monDom2|scaffold_26 (26733277-26733461) | |
| 422-596, gnl|oryCun1|scaffold_156503 (10475-10724) | |
| 422-596, gnl|panTro1|chr3 (83875587-83875403) | |
| 422-596, gnl|rheMac2|chr5 (67390972-67390788) | |
| 422-596, gnl|rn3|chr14 (28422576-28422392) | |
| 422-596, gnl|tetNig1|chrUn_random (56103330-56103154) | |
| 422-596, gnl|xenTro1|scaffold_650 (561632-561455) | |
| 815-1200, gnl|bosTau2|chr6 (22714537-22714919) | |
| 815-1200, gnl|Hg17|chr4 (62764591-62764973) | |
| 815-1200, gnl|Mm7|chr5 (81727833-81728215) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |