Non-Coding RNA Search

Ss1.1-Pig4-TMW8039I19.3

Sequence:


               
               GAGCACTGAATCCCCCACCTCCTCCCTGGGGTCTCTAGAGTTTGACCTGCTCCTGGGTCC
TGGCCTTGGGTTCCAGTGGACCAACCAGAGGCCTGGGTGACCACGAATCATTATTGTCCT
GAGCCCTGAATGGACCAATCAGAAGGCTAAGTGATGCTGACGCATTGATGGCGGGTCCTG
AGTGGACCCGATGGGAGCCTGAGTCATGATGACCATCTCATGTCCTAGGTCCTGGGTCGA
CCAATCAGGGAGCCCTGGTATTAATGACCCATTGGTCTCTTGGATCCTGAATAGAACAAT
CCAGAAGTCTGAGAGCCAGTGGCCTCTTAACAATCTGGGTCTGACTGGACCAGCCAGGGA
TCCAGACTTCTGTTTATAAATAAGGGTCCAAATGCTGAAGACACCTCTTCTCTCCAAAGA
AGGGGGCCACTTGGAGGCTCTGGGGGCTTCCGTAGCTGAGAGCCCCACCCCTCCCTAATC
ATGGTACCAGACCAGTGTTGACAGTGCCCACAGCTTGGGAACGGGGCTTTAGTGCCCTCC
TGTGCTGTCAGTGTTTGCTGTGCCACCTCCCCCCTGTGCCCACCCCCCAGTTATTTATTT
ATTATCCTGTGCCGGTGGGGGTGGGGGCTGGGCCTTCCCCGCCGCCCCCTCCCCTCTTGT
AACTAGTCCTCCTGGACATAATAAAGTGCAAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCACTGAATCCCCCACCTCCTCCCTGGGGTCTCTAGAGTTTGACCTGCTCCTGGGTCC
TGGCCTTGGGTTCCAGTGGACCAACCAGAGGCCTGGGTGACCACGAATCATTATTGTCCT
GAGCCCTGAATGGACCAATCAGAAGGCTAAGTGATGCTGACGCATTGATGGCGGGTCCTG
AGTGGACCCGATGGGAGCCTGAGTCATGATGACCATCTCATGTCCTAGGTCCTGGGTCGA
CCAATCAGGGAGCCCTGGTATTAATGACCCATTGGTCTCTTGGATCCTGAATAGAACAAT
CCAGAAGTCTGAGAGCCAGTGGCCTCTTAACAATCTGGGTCTGACTGGACCAGCCAGGGA
TCCAGACTTCTGTTTATAAATAAGGGTCCAAATGCTGAAGACACCTCTTCTCTCCAAAGA
AGGGGGCCACTTGGAGGCTCTGGGGGCTTCCGTAGCTGAGAGCCCCACCCCTCCCTAATC
ATGGTACCAGACCAGTGTTGACAGTGCCCACAGCTTGGGAACGGGGCTTTAGTGCCCTCC
TGTGCTGTCAGTGTTTGCTGTGCCACCTCCCCCCTGTGCCCACCCCCCAGTTATTTATTT
ATTATCCTGTGCCGGTGGGGGTGGGGGCTGGGCCTTCCCCGCCGCCCCCTCCCCTCTTGT
AACTAGTCCTCCTGGACATAATAAAGTGCAAGTGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               231-386, - strand, RNAz p=0.867261
               

               
               582-696, - strand, RNAz p=0.979283

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-386, - strand, RNAz p=0.867261
               

               
               582-696, - strand, RNAz p=0.979283

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               336-500, + strand, RNAmicro p=0.999635

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               336-500, + strand, RNAmicro p=0.999635

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-696, gnl|bosTau2|chr5 (67298603-67297935)
               

               
               16-696, gnl|Hg17|chr22 (36386701-36387433)
               

               
               16-696, gnl|Mm7|chr15 (79001711-79002463)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-696, gnl|bosTau2|chr5 (67298603-67297935)
               

               
               16-696, gnl|Hg17|chr22 (36386701-36387433)
               

               
               16-696, gnl|Mm7|chr15 (79001711-79002463)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	231-386, - strand, RNAz p=0.867261
	582-696, - strand, RNAz p=0.979283

	16-696, gnl\|bosTau2\|chr5 (67298603-67297935)
	16-696, gnl\|Hg17\|chr22 (36386701-36387433)
	16-696, gnl\|Mm7\|chr15 (79001711-79002463)

	fce (0.271592)
	fty (0.17584)
	fhi (0.169578)
	cli (0.152812)
	ebs (0.118301)
	eje (0.0988338)