Ss1.1-Pig4-TMW8039I23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGAATTCTTCTCACAGCCATGACGATGAAGATGATGACGATGACAGCGATGCTGATG ATGACGGTGGTGGCGACGATGAAAATGACCACAACACTTCAGGGGTTGGAGAGAATTCTA TACCGACAATATATTTTTCTCATACTGTCGAACCTAAGAGGGTCCGAATAAATACTGGAA AAAATACCACTTTAAAATTCAGTGAAAAGAAAGAAGAAGCCAAACGCAAACGAAAGAACA GCTCTGGCAGCGGTCATTCTGCCCAAGAGCTGCCTATGATCCGGACTCCTGCTGACATTT ACAGAGTCTTTGTTGATATTGTGAACGGAGAATACGTTCCTCGTAAGTCAATCCTGAAGT CTCGCAGCAGAGAGAACAGTGTTTGCAGTGACACCAGTGAAAGCAGTGCGGCCGACTTCG ATGACAGACGGGGCGTCTTGAGGAGCATTAGCTGTGAAGAGGCCACTTGTAGTGACACTA GTGAGAGCATTTTGGAAGAGGAACAGCAAGAAAACCATCAGAAGAAACTGTTGCCCTCAT CAGGAACACTGGAGGCTTTTTCTGGAACTGTAATAGAAAAAGAATTTTTGTCGCCCTCCT TACCACCACACCCAGCCATAGCTCATCCTCTGCTACCCACCATCCCAGAACGAAAAGAAG TTCTGTCAGAAGTATCAGAAGGAACTACAAAGAGGGTTTCAAAGTTCAAAGCTGCCAGAT TGCAGCAGAAAAACTAGGGCCTGCCTAGGAAATGGGAGTTTGACATCCTAAAACCTAGTT TTGCAATTGTTTAGAATATGTATAGCAAAATACATTTCCTGTAATTTGAAATAAGGCATC CTGAGTTAATTTGGCAGCGAGTTCTCTTACTCTTATCAGTGGTATTTAAAAAAGTCAAAG TAAATATTTAAATACTTTAATATTTGGCTTGTTTTGTTAATCTCTGAATATTGTCAACAG TCTAGTTTAAGTTTGCCTTATGATGCAGTGGCAGCATTTTGCATTATTTTTCGAAGAATA CTGTTCATGTGCACTGTTTTTGTGTTTCGAACTTAAGTACAGGCAGTTTTGCACCAGCTG TGATGTTGTGCATACCATATGGCCATTTTAAAGAAACTTTAAAAATTTCAAATAGATTCA ACAATTATATTACTTGCTTTAGCATTTTAAAGGCACTTTAAAAAAAAAAAAAAAAAAACC TACTTCTTGTAGGTTTTGCAGCTAGGTGGCTGTCTAAAAAAATTTCTCCCCCTTTGACTG TCATTCTGTAATCTCTAAAGCAGAAAGCTACATGTACCCAAAGGAAAGTTTCTTTGATTG GAAGAATGGTATTTTGTAAAACTTTTTTTTTAAGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGAATTCTTCTCACAGCCATGACGATGAAGATGATGACGATGACAGCGATGCTGATG ATGACGGTGGTGGCGACGATGAAAATGACCACAACACTTCAGGGGTTGGAGAGAATTCTA TACCGACAATATATTTTTCTCATACTGTCGAACCTAAGAGGGTCCGAATAAATACTGGAA AAAATACCACTTTAAAATTCAGTGAAAAGAAAGAAGAAGCCAAACGCAAACGAAAGAACA GCTCTGGCAGCGGTCATTCTGCCCAAGAGCTGCCTATGATCCGGACTCCTGCTGACATTT ACAGAGTCTTTGTTGATATTGTGAACGGAGAATACGTTCCTCGTAAGTCAATCCTGAAGT CTCGCAGCAGAGAGAACAGTGTTTGCAGTGACACCAGTGAAAGCAGTGCGGCCGACTTCG ATGACAGACGGGGCGTCTTGAGGAGCATTAGCTGTGAAGAGGCCACTTGTAGTGACACTA GTGAGAGCATTTTGGAAGAGGAACAGCAAGAAAACCATCAGAAGAAACTGTTGCCCTCAT CAGGAACACTGGAGGCTTTTTCTGGAACTGTAATAGAAAAAGAATTTTTGTCGCCCTCCT TACCACCACACCCAGCCATAGCTCATCCTCTGCTACCCACCATCCCAGAACGAAAAGAAG TTCTGTCAGAAGTATCAGAAGGAACTACAAAGAGGGTTTCAAAGTTCAAAGCTGCCAGAT TGCAGCAGAAAAACTAGGGCCTGCCTAGGAAATGGGAGTTTGACATCCTAAAACCTAGTT TTGCAATTGTTTAGAATATGTATAGCAAAATACATTTCCTGTAATTTGAAATAAGGCATC CTGAGTTAATTTGGCAGCGAGTTCTCTTACTCTTATCAGTGGTATTTAAAAAAGTCAAAG TAAATATTTAAATACTTTAATATTTGGCTTGTTTTGTTAATCTCTGAATATTGTCAACAG TCTAGTTTAAGTTTGCCTTATGATGCAGTGGCAGCATTTTGCATTATTTTTCGAAGAATA CTGTTCATGTGCACTGTTTTTGTGTTTCGAACTTAAGTACAGGCAGTTTTGCACCAGCTG TGATGTTGTGCATACCATATGGCCATTTTAAAGAAACTTTAAAAATTTCAAATAGATTCA ACAATTATATTACTTGCTTTAGCATTTTAAAGGCACTTTAAAAAAAAAAAAAAAAAAACC TACTTCTTGTAGGTTTTGCAGCTAGGTGGCTGTCTAAAAAAATTTCTCCCCCTTTGACTG TCATTCTGTAATCTCTAAAGCAGAAAGCTACATGTACCCAAAGGAAAGTTTCTTTGATTG GAAGAATGGTATTTTGTAAAACTTTTTTTTTAAGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 672-831, - strand, RNAz p=0.980543 | |
| 950-1068, - strand, RNAz p=0.938182 | |
| 1148-1265, + strand, RNAz p=0.710535 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 672-831, - strand, RNAz p=0.980543 | |
| 950-1068, - strand, RNAz p=0.938182 | |
| 1148-1265, + strand, RNAz p=0.710535 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_134447, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 161-304, gnl|bosTau2|chr18 (33285400-33285257) | |
| 161-304, gnl|canFam2|chr1 (124472189-124472333) | |
| 161-304, gnl|canFam2|chr1 (124472337-124472180) | |
| 161-304, gnl|danRer3|chr18 (11910242-11910077) | |
| 161-304, gnl|dasNov1|scaffold_2751 (55079-55238) | |
| 161-304, gnl|dasNov1|scaffold_39235 (7658-7799) | |
| 161-304, gnl|echTel1|scaffold_285736 (55235-55093) | |
| 161-304, gnl|echTel1|scaffold_285736 (55089-55246) | |
| 161-304, gnl|fr1|chrUn (198897356-198897602) | |
| 161-304, gnl|fr1|chrUn (198897528-198897362) | |
| 161-304, gnl|galGal2|chr11 (8739837-8739689) | |
| 161-304, gnl|galGal2|chr11 (8739685-8739841) | |
| 161-304, gnl|hg17|chr19 (35193836-35193993) | |
| 161-304, gnl|Hg17|chr19 (35193840-35193983) | |
| 161-304, gnl|hg17|chr22 (20908073-20908217) | |
| 161-304, gnl|loxAfr1|scaffold_11100 (62695-62537) | |
| 161-304, gnl|loxAfr1|scaffold_127829 (227-384) | |
| 161-304, gnl|mm7|chr7 (34854550-34854691) | |
| 161-304, gnl|mm7|chr7 (34854695-34854541) | |
| 161-304, gnl|Mm7|chr7 (34854689-34854549) | |
| 161-304, gnl|monDom2|scaffold_1 (190298700-190298554) | |
| 161-304, gnl|monDom2|scaffold_35 (7612705-7612552) | |
| 161-304, gnl|oryCun1|scaffold_175016 (11726-11582) | |
| 161-304, gnl|oryCun1|scaffold_175016 (11578-11735) | |
| 161-304, gnl|panTro1|chr20 (31677254-31677411) | |
| 161-304, gnl|rheMac2|chr19 (36474297-36474153) | |
| 161-304, gnl|rheMac2|chr19 (36474149-36474306) | |
| 161-304, gnl|rn3|chr1 (90512006-90512136) | |
| 161-304, gnl|rn3|chr1 (90512151-90512004) | |
| 161-304, gnl|tetNig1|chr13 (6681003-6681233) | |
| 161-304, gnl|tetNig1|chr13 (6681171-6681005) | |
| 161-304, gnl|xenTro1|scaffold_83 (2469967-2469817) | |
| 553-1356, gnl|bosTau2|chr18 (33281025-33280231) | |
| 553-1356, gnl|Hg17|chr19 (35197632-35198428) | |
| 553-1356, gnl|Mm7|chr7 (34852855-34852114) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-304, gnl|bosTau2|chr18 (33285400-33285257) | |
| 161-304, gnl|canFam2|chr1 (124472189-124472333) | |
| 161-304, gnl|canFam2|chr1 (124472337-124472180) | |
| 161-304, gnl|danRer3|chr18 (11910242-11910077) | |
| 161-304, gnl|dasNov1|scaffold_2751 (55079-55238) | |
| 161-304, gnl|dasNov1|scaffold_39235 (7658-7799) | |
| 161-304, gnl|echTel1|scaffold_285736 (55235-55093) | |
| 161-304, gnl|echTel1|scaffold_285736 (55089-55246) | |
| 161-304, gnl|fr1|chrUn (198897356-198897602) | |
| 161-304, gnl|fr1|chrUn (198897528-198897362) | |
| 161-304, gnl|galGal2|chr11 (8739837-8739689) | |
| 161-304, gnl|galGal2|chr11 (8739685-8739841) | |
| 161-304, gnl|hg17|chr19 (35193836-35193993) | |
| 161-304, gnl|Hg17|chr19 (35193840-35193983) | |
| 161-304, gnl|hg17|chr22 (20908073-20908217) | |
| 161-304, gnl|loxAfr1|scaffold_11100 (62695-62537) | |
| 161-304, gnl|loxAfr1|scaffold_127829 (227-384) | |
| 161-304, gnl|mm7|chr7 (34854550-34854691) | |
| 161-304, gnl|mm7|chr7 (34854695-34854541) | |
| 161-304, gnl|Mm7|chr7 (34854689-34854549) | |
| 161-304, gnl|monDom2|scaffold_1 (190298700-190298554) | |
| 161-304, gnl|monDom2|scaffold_35 (7612705-7612552) | |
| 161-304, gnl|oryCun1|scaffold_175016 (11726-11582) | |
| 161-304, gnl|oryCun1|scaffold_175016 (11578-11735) | |
| 161-304, gnl|panTro1|chr20 (31677254-31677411) | |
| 161-304, gnl|rheMac2|chr19 (36474297-36474153) | |
| 161-304, gnl|rheMac2|chr19 (36474149-36474306) | |
| 161-304, gnl|rn3|chr1 (90512006-90512136) | |
| 161-304, gnl|rn3|chr1 (90512151-90512004) | |
| 161-304, gnl|tetNig1|chr13 (6681003-6681233) | |
| 161-304, gnl|tetNig1|chr13 (6681171-6681005) | |
| 161-304, gnl|xenTro1|scaffold_83 (2469967-2469817) | |
| 553-1356, gnl|bosTau2|chr18 (33281025-33280231) | |
| 553-1356, gnl|Hg17|chr19 (35197632-35198428) | |
| 553-1356, gnl|Mm7|chr7 (34852855-34852114) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| nms (0.213858) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| ute (0.132784) | |
| thg (0.126791) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| ute (0.132784) | |
| thg (0.126791) | |
| cty (0.10408) |