Ss1.1-Pig4-TMW8039J03.5
|
TTGACATGCTGAGAGTGGAACAGGTGAAGATTCATGCAGGCCCAAAGTTCGCCTCCTATC
TGACCTTCAGCCCCTCTGAAGTGAAGTCTCTCCGAACTGAGTACGGGGACCTGGAACTGT
GCATAGAAGTGGTGGACAGCGTGCAGGAGGCCATCGACCACATCCACAAGTACGGCAGCT
CCCACACAGATGTCATCGTCACAGAGAACGAAAAGACAGCAGAGTTCTTCCTCCAGCATG
TGGATAGCGCCTGTGTGTTCTGGAATGCCAGCACTCGCTTCTCTGATGGCTACCGCTTTG
GACTGGGAGCTGAAGTGGGAATCAGTACATCCCGAATCCACGCCCGGGGACCAGTGGGAC
TTGAAGGATTGCTTACTACCAAGTGGCTGCTGCGAGGGGAGGACCACGTGGTCTCAGACT
TCTCAGAGCACGGAAGCTTAAAGTATCTTCACGAGAACCTCCCTGTTCCCCAGAGAAACA
CCAACTGAAAGCATTCAGAGGAGAGCCGGACATGTTTTGAGGGGTCTTCCCAGTTAAAAT
GGTCTTCTGCACCTCAGGGGATGGACCAGGCCTTCTTGTCTCCTGCTTCCTGGAAGGGTC
TCCTGTTGGAACGTGCACCTTGATGCTTCTGGGCTCTGTGGCAACATCAGCCTGGGCCAA
AGACTCCGTTCCAGCTTACCCTTTTCTTTCTTTCTTCCTTCTTTCCTTCCTTTCTCTCTC
TTTTTCTTCCTCTCTCTCTTTCTTTCTAAGTTAGATAACAGTCGCTGTAGTTAGGGACTT
TGCTTAATTGCTACGGATGGGGACTTTGCCTCACATAGTGTAATTCCCTTCAGTGATAGA
AACAGAAAGGTGCCATTTCCCCACATAAAAGGCAGTGGAAAATCATGGTTGCTTTTTACC
TTTTATCGCCTCAATGAGGTAAAGTCTCCCTTGGCATTTGGTAGTTACAAGAGCCAGTCA
CACCTAATAAGTCTTTCCATGTTTCATTTCTTTCATACTCCTAGTCATCTTCAAAAAGGA
AAGATTTGGAACTTAGAAGAGAGACAGCTCTTCTTTTTAGCATTCTCATCATAAGCAATC
ACAAAAAGGACTAAATCATTTGCACTGGGAAGATTGACATTTTGTATTTATTGGAGTAAA
TATAAGTAAACTCTCTGGATCCAGGGGCTTGCCACTACCTGGACACAGTTGGAACCCAGA
GCTGCAGATAGGAGGTACAAGTTTCAGGATGAAGTACCTGCAGCCATTGTGCTTGAAATT
TTTTTACGAATTATTTTGTCATCCTTTCCTTTCCCAAAAAAAAACAAAAATTAGAGGATT
ATTTTAATACTTTGGATTCTTCCCTCCTTTTTGAGAAATAAAGTTCTTATGAAAAGCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTGACATGCTGAGAGTGGAACAGGTGAAGATTCATGCAGGCCCAAAGTTCGCCTCCTATC
TGACCTTCAGCCCCTCTGAAGTGAAGTCTCTCCGAACTGAGTACGGGGACCTGGAACTGT
GCATAGAAGTGGTGGACAGCGTGCAGGAGGCCATCGACCACATCCACAAGTACGGCAGCT
CCCACACAGATGTCATCGTCACAGAGAACGAAAAGACAGCAGAGTTCTTCCTCCAGCATG
TGGATAGCGCCTGTGTGTTCTGGAATGCCAGCACTCGCTTCTCTGATGGCTACCGCTTTG
GACTGGGAGCTGAAGTGGGAATCAGTACATCCCGAATCCACGCCCGGGGACCAGTGGGAC
TTGAAGGATTGCTTACTACCAAGTGGCTGCTGCGAGGGGAGGACCACGTGGTCTCAGACT
TCTCAGAGCACGGAAGCTTAAAGTATCTTCACGAGAACCTCCCTGTTCCCCAGAGAAACA
CCAACTGAAAGCATTCAGAGGAGAGCCGGACATGTTTTGAGGGGTCTTCCCAGTTAAAAT
GGTCTTCTGCACCTCAGGGGATGGACCAGGCCTTCTTGTCTCCTGCTTCCTGGAAGGGTC
TCCTGTTGGAACGTGCACCTTGATGCTTCTGGGCTCTGTGGCAACATCAGCCTGGGCCAA
AGACTCCGTTCCAGCTTACCCTTTTCTTTCTTTCTTCCTTCTTTCCTTCCTTTCTCTCTC
TTTTTCTTCCTCTCTCTCTTTCTTTCTAAGTTAGATAACAGTCGCTGTAGTTAGGGACTT
TGCTTAATTGCTACGGATGGGGACTTTGCCTCACATAGTGTAATTCCCTTCAGTGATAGA
AACAGAAAGGTGCCATTTCCCCACATAAAAGGCAGTGGAAAATCATGGTTGCTTTTTACC
TTTTATCGCCTCAATGAGGTAAAGTCTCCCTTGGCATTTGGTAGTTACAAGAGCCAGTCA
CACCTAATAAGTCTTTCCATGTTTCATTTCTTTCATACTCCTAGTCATCTTCAAAAAGGA
AAGATTTGGAACTTAGAAGAGAGACAGCTCTTCTTTTTAGCATTCTCATCATAAGCAATC
ACAAAAAGGACTAAATCATTTGCACTGGGAAGATTGACATTTTGTATTTATTGGAGTAAA
TATAAGTAAACTCTCTGGATCCAGGGGCTTGCCACTACCTGGACACAGTTGGAACCCAGA
GCTGCAGATAGGAGGTACAAGTTTCAGGATGAAGTACCTGCAGCCATTGTGCTTGAAATT
TTTTTACGAATTATTTTGTCATCCTTTCCTTTCCCAAAAAAAAACAAAAATTAGAGGATT
ATTTTAATACTTTGGATTCTTCCCTCCTTTTTGAGAAATAAAGTTCTTATGAAAAGCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|50750011|ref|XP_421835.1| |
Protein identifier
|
gi|50750011|ref|XP_421835.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
21-210, gnl|bosTau2|chr26 (6704419-6704608) |
|
21-210, gnl|Hg17|chr10 (97361192-97361003) |
|
21-210, gnl|Mm7|chr19 (40448568-40448379) |
| |
|
306-717, gnl|bosTau2|chr26 (6708190-6708596) |
|
306-717, gnl|Hg17|chr10 (97356691-97356308) |
|
306-717, gnl|Mm7|chr19 (40445118-40444730) |
| |
|
726-1156, gnl|bosTau2|chr26 (6708575-6709004) |
|
726-1156, gnl|canFam2|chr28 (12099149-12099752) |
|
726-1156, gnl|dasNov1|scaffold_1289 (41390-42028) |
|
726-1156, gnl|hg17|chr10 (97355605-97356232) |
|
726-1156, gnl|Hg17|chr10 (97356316-97355942) |
|
726-1156, gnl|loxAfr1|scaffold_184 (131109-131748) |
|
726-1156, gnl|mm7|chr19 (40443962-40444559) |
|
726-1156, gnl|Mm7|chr19 (40444751-40444301) |
|
726-1156, gnl|monDom2|scaffold_14 (27231824-27231222) |
|
726-1156, gnl|oryCun1|scaffold_205839 (194539-193948) |
|
726-1156, gnl|panTro1|chr8 (99036094-99036721) |
|
726-1156, gnl|rheMac2|chr9 (95143065-95143695) |
|
726-1156, gnl|rn3|chr1 (245795522-245796134) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
21-210, gnl|bosTau2|chr26 (6704419-6704608) |
|
21-210, gnl|Hg17|chr10 (97361192-97361003) |
|
21-210, gnl|Mm7|chr19 (40448568-40448379) |
| |
|
306-717, gnl|bosTau2|chr26 (6708190-6708596) |
|
306-717, gnl|Hg17|chr10 (97356691-97356308) |
|
306-717, gnl|Mm7|chr19 (40445118-40444730) |
| |
|
726-1156, gnl|bosTau2|chr26 (6708575-6709004) |
|
726-1156, gnl|canFam2|chr28 (12099149-12099752) |
|
726-1156, gnl|dasNov1|scaffold_1289 (41390-42028) |
|
726-1156, gnl|hg17|chr10 (97355605-97356232) |
|
726-1156, gnl|Hg17|chr10 (97356316-97355942) |
|
726-1156, gnl|loxAfr1|scaffold_184 (131109-131748) |
|
726-1156, gnl|mm7|chr19 (40443962-40444559) |
|
726-1156, gnl|Mm7|chr19 (40444751-40444301) |
|
726-1156, gnl|monDom2|scaffold_14 (27231824-27231222) |
|
726-1156, gnl|oryCun1|scaffold_205839 (194539-193948) |
|
726-1156, gnl|panTro1|chr8 (99036094-99036721) |
|
726-1156, gnl|rheMac2|chr9 (95143065-95143695) |
|
726-1156, gnl|rn3|chr1 (245795522-245796134) |
|
cmu (0.931966) |
|
lin (0.873617) |
|
cte (0.58548) |
|
sag (0.548145) |
|
nco (0.485201) |
|
sin (0.349895) |
|
eye (0.341006) |
|
spc (0.340097) |
|
fco (0.314416) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
gul (0.177588) |
|
rec (0.17307) |
|
cut (0.169924) |
|
cje (0.165235) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
cmu (0.931966) |
|
lin (0.873617) |
|
cte (0.58548) |
|
sag (0.548145) |
|
nco (0.485201) |
|
sin (0.349895) |
|
eye (0.341006) |
|
spc (0.340097) |
|
fco (0.314416) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
gul (0.177588) |
|
rec (0.17307) |
|
cut (0.169924) |
|
cje (0.165235) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
nbm (0.0993246) |
