Non-Coding RNA Search

Ss1.1-Pig4-TMW8039J04.3

Sequence:


               
               CACCAAGCAAAGCTAATAATGTTACAGTTTTATTGAGAAACAGCTGTGGTCTCTTTTTCT
TAAACTGGTTTAGCAACAAGAGCTTTATAACATGTTTCAGCTGGGGATTCATTGTCGGCC
TGCAAATTATCCAAATGTTTTTCCTCGGGCCCTGTGACAGGTGGAAGAGGCGGCTCTGTG
TTATGAAGATGTTACCAGGAGGGTGTGCCGGCCTGTGGCAGGGTTACTGAGTCTTGCTCT
TTAATCCAGCAAACTTAGTTCTGGTCCTGTTTCTTCTCAAAACAAAAGCTTCCCAGCAAA
CGGATTGCGTGGGGTGTTTTCCAAAGTACAACCCGAGGACTTGAGCCCTCTCCCTCGTTA
GCCCAGACCTCAGACTGTCTCCATTAGCTTTGATAAGGTCATACTTTTCTCGGAAGGGGT
TTTGGATGGCAATGAAGCTAAAGATTGCTTTATTCGCATTGAAAATGTTTACACTGATTC
CCTCTGGGTAGTAGACTGTTTTGAAATCAGCTCCTAGATTTAAGACCAAAAAAATGAAAA
AATAAATATTTCTAAATCTCAAAGATATAATACCTCTGGCTGAAAACTTGTTATCATCTG
TATGGTGTTTTCTTCATGTGCTTCTGTGTAATTCTTTCTGTACTGAAGTGTGCATTAAGG
TGTGTCCTACTTCTTGGCTAATGAAGCCTAAAAATATACCTGTAAATAAAATACGCCATA
TATTTTTGTTTCTTGCTTGTTTTGCTTGTAGTAGTATTATGACTACTTTTTACTCAAGGA
ATTTTTGCATAGATCATATGCTCTTACTAACTTGTAATGGGGATGAGTCGTGAGATTGAT
AGTTATTTGATTTTGTAATAACTTTTAGGCCTAGATTTAATTAGAAAAAGTTACTTGAAA
ACTGCAGTAAATGTGATTGCTCTAGTGATACAGGATTTTTTTTTTTTCTGAGAATGTATC
ACATTAATGTTTAATTGTCAGACATTTTGGAAGTCTTTCAAAATGTATGTATTAACATTT
TGAGAACACATCTTCAAATGTATTTCCGTAAGGCTGAAAAGCTTTTGTTTGATTTACAAA
ATGCAAGACTCGATAATTTACAAATCATCGTCATCCAGATTTATCAGCAATTAAAGTAGC
GATTTAGGATTCTTTTTGGTTTCTGGTTGTGCTTTGTTTGGAAGGATTCATAGGCATCTT
TAGGTATTCCCTTAAAATTTTGAAAAGTTTGTATTCTTTGTATGTGTGCCATGTTAAAGT
ATATGCAAGTTCTAAGCAATAATTGCATGTTATACAAGGTTGGCATTACTTTGTCATGAT
AGTTTTGTTATTTGAAGAATGTATAAAATCAATATCCTACATATAAATCACTCCTCCCCC
CACCCGCGGGCCCACAAGGAGAATGTTGGGGTTTTCTTGTGTTAGAACACTACTATAATG
TGGCGCCAAGCTTTGTATTTTGTGAAGAAAATAAAATCGCAATTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAAGCAAAGCTAATAATGTTACAGTTTTATTGAGAAACAGCTGTGGTCTCTTTTTCT
TAAACTGGTTTAGCAACAAGAGCTTTATAACATGTTTCAGCTGGGGATTCATTGTCGGCC
TGCAAATTATCCAAATGTTTTTCCTCGGGCCCTGTGACAGGTGGAAGAGGCGGCTCTGTG
TTATGAAGATGTTACCAGGAGGGTGTGCCGGCCTGTGGCAGGGTTACTGAGTCTTGCTCT
TTAATCCAGCAAACTTAGTTCTGGTCCTGTTTCTTCTCAAAACAAAAGCTTCCCAGCAAA
CGGATTGCGTGGGGTGTTTTCCAAAGTACAACCCGAGGACTTGAGCCCTCTCCCTCGTTA
GCCCAGACCTCAGACTGTCTCCATTAGCTTTGATAAGGTCATACTTTTCTCGGAAGGGGT
TTTGGATGGCAATGAAGCTAAAGATTGCTTTATTCGCATTGAAAATGTTTACACTGATTC
CCTCTGGGTAGTAGACTGTTTTGAAATCAGCTCCTAGATTTAAGACCAAAAAAATGAAAA
AATAAATATTTCTAAATCTCAAAGATATAATACCTCTGGCTGAAAACTTGTTATCATCTG
TATGGTGTTTTCTTCATGTGCTTCTGTGTAATTCTTTCTGTACTGAAGTGTGCATTAAGG
TGTGTCCTACTTCTTGGCTAATGAAGCCTAAAAATATACCTGTAAATAAAATACGCCATA
TATTTTTGTTTCTTGCTTGTTTTGCTTGTAGTAGTATTATGACTACTTTTTACTCAAGGA
ATTTTTGCATAGATCATATGCTCTTACTAACTTGTAATGGGGATGAGTCGTGAGATTGAT
AGTTATTTGATTTTGTAATAACTTTTAGGCCTAGATTTAATTAGAAAAAGTTACTTGAAA
ACTGCAGTAAATGTGATTGCTCTAGTGATACAGGATTTTTTTTTTTTCTGAGAATGTATC
ACATTAATGTTTAATTGTCAGACATTTTGGAAGTCTTTCAAAATGTATGTATTAACATTT
TGAGAACACATCTTCAAATGTATTTCCGTAAGGCTGAAAAGCTTTTGTTTGATTTACAAA
ATGCAAGACTCGATAATTTACAAATCATCGTCATCCAGATTTATCAGCAATTAAAGTAGC
GATTTAGGATTCTTTTTGGTTTCTGGTTGTGCTTTGTTTGGAAGGATTCATAGGCATCTT
TAGGTATTCCCTTAAAATTTTGAAAAGTTTGTATTCTTTGTATGTGTGCCATGTTAAAGT
ATATGCAAGTTCTAAGCAATAATTGCATGTTATACAAGGTTGGCATTACTTTGTCATGAT
AGTTTTGTTATTTGAAGAATGTATAAAATCAATATCCTACATATAAATCACTCCTCCCCC
CACCCGCGGGCCCACAAGGAGAATGTTGGGGTTTTCTTGTGTTAGAACACTACTATAATG
TGGCGCCAAGCTTTGTATTTTGTGAAGAAAATAAAATCGCAATTCTTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-508, gnl|bosTau2|chr3 (37354062-37354565)
               

               
               1-508, gnl|Hg17|chr1 (95373697-95374253)
               

               
               1-508, gnl|Mm7|chr3 (120974932-120974469)
               


               
               549-1477, gnl|bosTau2|chr3 (37354556-37355485)
               

               
               549-1477, gnl|Hg17|chr1 (95374202-95375159)
               

               
               549-1477, gnl|Mm7|chr3 (120974478-120973598)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-508, gnl|bosTau2|chr3 (37354062-37354565)
               

               
               1-508, gnl|Hg17|chr1 (95373697-95374253)
               

               
               1-508, gnl|Mm7|chr3 (120974932-120974469)
               


               
               549-1477, gnl|bosTau2|chr3 (37354556-37355485)
               

               
               549-1477, gnl|Hg17|chr1 (95374202-95375159)
               

               
               549-1477, gnl|Mm7|chr3 (120974478-120973598)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               cbe (0.717703)
               

               
               ova (0.645661)
               

               
               rec (0.519211)
               

               
               hea (0.408998)
               

               
               cmu (0.372787)
               

               
               duo (0.345602)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               nbm (0.198649)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               ova (0.645661)
               

               
               rec (0.519211)
               

               
               hea (0.408998)
               

               
               cmu (0.372787)
               

               
               duo (0.345602)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               nbm (0.198649)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-508, gnl\|bosTau2\|chr3 (37354062-37354565)
	1-508, gnl\|Hg17\|chr1 (95373697-95374253)
	1-508, gnl\|Mm7\|chr3 (120974932-120974469)

	549-1477, gnl\|bosTau2\|chr3 (37354556-37355485)
	549-1477, gnl\|Hg17\|chr1 (95374202-95375159)
	549-1477, gnl\|Mm7\|chr3 (120974478-120973598)

	cbe (0.717703)
	ova (0.645661)
	rec (0.519211)
	hea (0.408998)
	cmu (0.372787)
	duo (0.345602)
	lin (0.291206)
	lyg (0.266205)
	ret (0.257467)
	nbm (0.198649)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	kid (0.129735)
	tra (0.123092)
	spc (0.113366)