Ss1.1-Pig4-TMW8039J08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTCTAAAAATTGTTCCCAGGGAGTCAGTTTATCCCTTTCCTTCCATTTGTTTTTGACC ATCTCTTCTGCACTTTCTTTAAGGCCTGGAACCCACTTAATTTCCATTTCCATATCATTT TCTTTGCCTTTCTTCTCTTTTTCTTGAATAACTTGCAAGAGCTGCCTATATTTAGCAATT TGTTCCTCATCATCCTTCTGAGTTCTTTTCGTTTTCCCATCTTCTTCTACATTGACCTCA TCATCACCCTGTAGCTCCTCTTCTATCTCCTCTTCATCTTCACTAGAAGAAGCTAAGTAG GCTTGAAAATCCATGTCCAAAAGCTCTTCCTTTTTAAATTTCCTGTTGAGTGTTGTAATT CTTTCGTGATCAGTTTCATCCCAAGTGATCTCCACCGTTGATGTTCCCATTGCAGCAGAA GTGAAATATTTTGGTTTATATGCTGTTAAATCCACTTCTGAGGCTACATCCTTGGGCTCA TCATCAAAAGTAATATCATCTGGTATAAACCTTAGATCTATGAAGGAACAGCTACTTTCG AATTCCAGGCCATCACAATCCTCATAAATTTTAGCGGCTGTTTCAGGAGAGTCACAGTCA ACTACTGCATAATAGTATTTCAGTCGCTTGAACTGATAATCTCTCAGTTTTTCTCTAGAG GTCCAGTCCTTTTCAGGGGCATCTTCAGGAATGCTTAATAACTCCACTGGTCCTTGAACT TGCTCTTCCTGCATCCTCTGCTTTCCAAACTCTGAAGGATATATCTTTACAGAAAATACA ACACCTCCTTTTGGTTTAAATGAATTAAACAAAGCCAGCAAATCTTTTGCCTTCAATCTA TCCCAGTCCATGTTGCAAACTGCTAATCGACGTGTAATCTCATCAGCCCGGGGAGCGTCT TTATCTAATTCTCTCCAAGCATGTTCAAAACCAGATTCCTCTGGAAGTAAATCTGCCATA TCTTCTTCATCTTCGGAACTAGTTTCTATATTTCCTTTGCCTCTTGCAAGATCAGGGCCA CTGTCACTCTCATCCTCCTCCTCACTACCCTCATCTTCATCCTCACTATCCTCATCTTCA TCCTCCTCCTCTTCGTTTTCGTTTCCATCATCGTCATCATCATCACCATCAACATCAGCT CCACCAATGCCTGTACTTTCATCTTCAGATTCTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTCTAAAAATTGTTCCCAGGGAGTCAGTTTATCCCTTTCCTTCCATTTGTTTTTGACC ATCTCTTCTGCACTTTCTTTAAGGCCTGGAACCCACTTAATTTCCATTTCCATATCATTT TCTTTGCCTTTCTTCTCTTTTTCTTGAATAACTTGCAAGAGCTGCCTATATTTAGCAATT TGTTCCTCATCATCCTTCTGAGTTCTTTTCGTTTTCCCATCTTCTTCTACATTGACCTCA TCATCACCCTGTAGCTCCTCTTCTATCTCCTCTTCATCTTCACTAGAAGAAGCTAAGTAG GCTTGAAAATCCATGTCCAAAAGCTCTTCCTTTTTAAATTTCCTGTTGAGTGTTGTAATT CTTTCGTGATCAGTTTCATCCCAAGTGATCTCCACCGTTGATGTTCCCATTGCAGCAGAA GTGAAATATTTTGGTTTATATGCTGTTAAATCCACTTCTGAGGCTACATCCTTGGGCTCA TCATCAAAAGTAATATCATCTGGTATAAACCTTAGATCTATGAAGGAACAGCTACTTTCG AATTCCAGGCCATCACAATCCTCATAAATTTTAGCGGCTGTTTCAGGAGAGTCACAGTCA ACTACTGCATAATAGTATTTCAGTCGCTTGAACTGATAATCTCTCAGTTTTTCTCTAGAG GTCCAGTCCTTTTCAGGGGCATCTTCAGGAATGCTTAATAACTCCACTGGTCCTTGAACT TGCTCTTCCTGCATCCTCTGCTTTCCAAACTCTGAAGGATATATCTTTACAGAAAATACA ACACCTCCTTTTGGTTTAAATGAATTAAACAAAGCCAGCAAATCTTTTGCCTTCAATCTA TCCCAGTCCATGTTGCAAACTGCTAATCGACGTGTAATCTCATCAGCCCGGGGAGCGTCT TTATCTAATTCTCTCCAAGCATGTTCAAAACCAGATTCCTCTGGAAGTAAATCTGCCATA TCTTCTTCATCTTCGGAACTAGTTTCTATATTTCCTTTGCCTCTTGCAAGATCAGGGCCA CTGTCACTCTCATCCTCCTCCTCACTACCCTCATCTTCATCCTCACTATCCTCATCTTCA TCCTCCTCCTCTTCGTTTTCGTTTCCATCATCGTCATCATCATCACCATCAACATCAGCT CCACCAATGCCTGTACTTTCATCTTCAGATTCTTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 85-248, gnl|bosTau2|chr13 (2699063-2698900) | |
| 85-248, gnl|Hg17|chr20 (13688338-13688501) | |
| 85-248, gnl|Mm7|chr2 (139889605-139889768) | |
| 259-396, gnl|bosTau2|chr13 (2695689-2695552) | |
| 259-396, gnl|canFam2|chr24 (11887797-11887654) | |
| 259-396, gnl|danRer3|chr10 (24892095-24892238) | |
| 259-396, gnl|dasNov1|scaffold_9950 (14754-14897) | |
| 259-396, gnl|echTel1|scaffold_287456 (112199-112056) | |
| 259-396, gnl|fr1|chrUn (220923686-220923824) | |
| 259-396, gnl|galGal2|chr14 (19639374-19639515) | |
| 259-396, gnl|hg17|chr20 (13695431-13695574) | |
| 259-396, gnl|Hg17|chr20 (13695435-13695572) | |
| 259-396, gnl|loxAfr1|scaffold_7513 (18134-18277) | |
| 259-396, gnl|mm7|chr2 (139895654-139895797) | |
| 259-396, gnl|Mm7|chr2 (139895658-139895795) | |
| 259-396, gnl|monDom2|scaffold_1 (47267941-47268084) | |
| 259-396, gnl|panTro1|chr21 (13541361-13541504) | |
| 259-396, gnl|rheMac2|chr10 (47048009-47048152) | |
| 259-396, gnl|rn3|chr3 (128244594-128244737) | |
| 259-396, gnl|tetNig1|chrUn_random (163372760-163372621) | |
| 259-396, gnl|xenTro1|scaffold_258 (300136-300007) | |
| 509-664, gnl|bosTau2|chr13 (2691094-2690939) | |
| 509-664, gnl|canFam2|chr24 (11883132-11883279) | |
| 509-664, gnl|canFam2|chr24 (11883288-11883128) | |
| 509-664, gnl|danRer3|chr10 (24893994-24893843) | |
| 509-664, gnl|danRer3|chr10 (24893837-24893998) | |
| 509-664, gnl|dasNov1|scaffold_126732 (675-842) | |
| 509-664, gnl|dasNov1|scaffold_13415 (48759-48611) | |
| 509-664, gnl|echTel1|scaffold_287456 (104853-104692) | |
| 509-664, gnl|echTel1|scaffold_316165 (110968-110816) | |
| 509-664, gnl|fr1|chrUn (220924461-220924310) | |
| 509-664, gnl|fr1|chrUn (220924304-220924465) | |
| 509-664, gnl|galGal2|chr3 (4352774-4352623) | |
| 509-664, gnl|galGal2|chr3 (4352617-4352781) | |
| 509-664, gnl|hg17|chr20 (13699974-13700135) | |
| 509-664, gnl|Hg17|chr20 (13699975-13700130) | |
| 509-664, gnl|hg17|chr8 (55047823-55047974) | |
| 509-664, gnl|loxAfr1|scaffold_7513 (23462-23311) | |
| 509-664, gnl|loxAfr1|scaffold_7513 (23305-23466) | |
| 509-664, gnl|mm7|chr2 (139899485-139899336) | |
| 509-664, gnl|mm7|chr2 (139899330-139899491) | |
| 509-664, gnl|Mm7|chr2 (139899331-139899486) | |
| 509-664, gnl|monDom2|scaffold_1 (47280223-47280072) | |
| 509-664, gnl|monDom2|scaffold_1 (47280066-47280227) | |
| 509-664, gnl|oryCun1|scaffold_212754 (5224-5075) | |
| 509-664, gnl|oryCun1|scaffold_212754 (5069-5230) | |
| 509-664, gnl|panTro1|chr21 (13546064-13545915) | |
| 509-664, gnl|panTro1|chr21 (13545909-13546070) | |
| 509-664, gnl|rheMac2|chr10 (47052456-47052617) | |
| 509-664, gnl|rheMac2|chr8 (56565677-56565828) | |
| 509-664, gnl|rn3|chr16 (37613526-37613398) | |
| 509-664, gnl|rn3|chr3 (128247831-128247971) | |
| 509-664, gnl|xenTro1|scaffold_258 (298131-298282) | |
| 509-664, gnl|xenTro1|scaffold_258 (298288-298127) | |
| 874-1176, gnl|bosTau2|chr13 (2687039-2686746) | |
| 874-1176, gnl|Hg17|chr20 (13704514-13704798) | |
| 874-1176, gnl|Mm7|chr2 (139905057-139905338) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-248, gnl|bosTau2|chr13 (2699063-2698900) | |
| 85-248, gnl|Hg17|chr20 (13688338-13688501) | |
| 85-248, gnl|Mm7|chr2 (139889605-139889768) | |
| 259-396, gnl|bosTau2|chr13 (2695689-2695552) | |
| 259-396, gnl|canFam2|chr24 (11887797-11887654) | |
| 259-396, gnl|danRer3|chr10 (24892095-24892238) | |
| 259-396, gnl|dasNov1|scaffold_9950 (14754-14897) | |
| 259-396, gnl|echTel1|scaffold_287456 (112199-112056) | |
| 259-396, gnl|fr1|chrUn (220923686-220923824) | |
| 259-396, gnl|galGal2|chr14 (19639374-19639515) | |
| 259-396, gnl|hg17|chr20 (13695431-13695574) | |
| 259-396, gnl|Hg17|chr20 (13695435-13695572) | |
| 259-396, gnl|loxAfr1|scaffold_7513 (18134-18277) | |
| 259-396, gnl|mm7|chr2 (139895654-139895797) | |
| 259-396, gnl|Mm7|chr2 (139895658-139895795) | |
| 259-396, gnl|monDom2|scaffold_1 (47267941-47268084) | |
| 259-396, gnl|panTro1|chr21 (13541361-13541504) | |
| 259-396, gnl|rheMac2|chr10 (47048009-47048152) | |
| 259-396, gnl|rn3|chr3 (128244594-128244737) | |
| 259-396, gnl|tetNig1|chrUn_random (163372760-163372621) | |
| 259-396, gnl|xenTro1|scaffold_258 (300136-300007) | |
| 509-664, gnl|bosTau2|chr13 (2691094-2690939) | |
| 509-664, gnl|canFam2|chr24 (11883132-11883279) | |
| 509-664, gnl|canFam2|chr24 (11883288-11883128) | |
| 509-664, gnl|danRer3|chr10 (24893994-24893843) | |
| 509-664, gnl|danRer3|chr10 (24893837-24893998) | |
| 509-664, gnl|dasNov1|scaffold_126732 (675-842) | |
| 509-664, gnl|dasNov1|scaffold_13415 (48759-48611) | |
| 509-664, gnl|echTel1|scaffold_287456 (104853-104692) | |
| 509-664, gnl|echTel1|scaffold_316165 (110968-110816) | |
| 509-664, gnl|fr1|chrUn (220924461-220924310) | |
| 509-664, gnl|fr1|chrUn (220924304-220924465) | |
| 509-664, gnl|galGal2|chr3 (4352774-4352623) | |
| 509-664, gnl|galGal2|chr3 (4352617-4352781) | |
| 509-664, gnl|hg17|chr20 (13699974-13700135) | |
| 509-664, gnl|Hg17|chr20 (13699975-13700130) | |
| 509-664, gnl|hg17|chr8 (55047823-55047974) | |
| 509-664, gnl|loxAfr1|scaffold_7513 (23462-23311) | |
| 509-664, gnl|loxAfr1|scaffold_7513 (23305-23466) | |
| 509-664, gnl|mm7|chr2 (139899485-139899336) | |
| 509-664, gnl|mm7|chr2 (139899330-139899491) | |
| 509-664, gnl|Mm7|chr2 (139899331-139899486) | |
| 509-664, gnl|monDom2|scaffold_1 (47280223-47280072) | |
| 509-664, gnl|monDom2|scaffold_1 (47280066-47280227) | |
| 509-664, gnl|oryCun1|scaffold_212754 (5224-5075) | |
| 509-664, gnl|oryCun1|scaffold_212754 (5069-5230) | |
| 509-664, gnl|panTro1|chr21 (13546064-13545915) | |
| 509-664, gnl|panTro1|chr21 (13545909-13546070) | |
| 509-664, gnl|rheMac2|chr10 (47052456-47052617) | |
| 509-664, gnl|rheMac2|chr8 (56565677-56565828) | |
| 509-664, gnl|rn3|chr16 (37613526-37613398) | |
| 509-664, gnl|rn3|chr3 (128247831-128247971) | |
| 509-664, gnl|xenTro1|scaffold_258 (298131-298282) | |
| 509-664, gnl|xenTro1|scaffold_258 (298288-298127) | |
| 874-1176, gnl|bosTau2|chr13 (2687039-2686746) | |
| 874-1176, gnl|Hg17|chr20 (13704514-13704798) | |
| 874-1176, gnl|Mm7|chr2 (139905057-139905338) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) | |
| ski (0.146735) | |
| thg (0.126791) |