Non-Coding RNA Search

Ss1.1-Pig4-TMW8039J10.5

Sequence:


               
               GCAGAAAAGCCACAAGCAAGGGCCCCAAGGGTCTGACTCAAAGAGGCTCCAGGGCTGGAC
CCCGACAAGGCAATGGGCCCCAGAACAAGACCTACAAAGCCACTGGGTCCCTCAGCAGCC
CACGAATGAAAGGTGGCTGTTCACTGGGCACCAAAATAGCCCAGGCCAAAGCTGCCCGTG
CTCAGGCCAAGGTGGCTAGAACACAGGCCAAAGTTGCCAAGGCGCGGGCAAAAGCCAAGG
CAGCACAGATCAAGGCTAAAGCCAAGGCAGCTCGGGCCAGGGCCAAGGCCAAGGCCAAGG
CAGTGCAGGCCAAGGCCAAGGCCAAGGCAGCACGGGCCAGGGCCAGGGCCAAGTCCAAGG
CAGTGCAGGCCAATGCCAAGGCAGTGCAGGCCAAGGCCAAGGTGGCTCGGATCCAGCCCA
GGGGCAGGGGCAGGCCAAAAAGGTCTGTTCAGGCCAGGACTGCAAGGAAGGGCCAGAAAA
GATGCCCCGAGACTGTGGGGCAGAAGAGGAAAAGGGCTGATGAGGAAAAGGATCTTCCTC
CCCGGAAGAGAACACGTCTTGGGCCCCAATCCCCTAAGATGTGGTTAGGACGTGGAACAG
CAAAGCTCCTGAGATTCCAGGCCATCAAGGTGGACAGGAGGTCCTCAGATGATGAGGTGC
GGCAGCAGGCTCAGCAGATCCTCCATGTGAACCTTTCTCCTATAATACAGCTCCAGCCAT
TGCTGCCATAATTGGCACCCTGATGACAGTGTTCGGGGAGACTGAGTCCACTTGTCTGTG
TGGTCATTGTCACAGAGTGCAATGCCCATGGATTCCATAACCCCAAGGACTCTGGGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAAAAGCCACAAGCAAGGGCCCCAAGGGTCTGACTCAAAGAGGCTCCAGGGCTGGAC
CCCGACAAGGCAATGGGCCCCAGAACAAGACCTACAAAGCCACTGGGTCCCTCAGCAGCC
CACGAATGAAAGGTGGCTGTTCACTGGGCACCAAAATAGCCCAGGCCAAAGCTGCCCGTG
CTCAGGCCAAGGTGGCTAGAACACAGGCCAAAGTTGCCAAGGCGCGGGCAAAAGCCAAGG
CAGCACAGATCAAGGCTAAAGCCAAGGCAGCTCGGGCCAGGGCCAAGGCCAAGGCCAAGG
CAGTGCAGGCCAAGGCCAAGGCCAAGGCAGCACGGGCCAGGGCCAGGGCCAAGTCCAAGG
CAGTGCAGGCCAATGCCAAGGCAGTGCAGGCCAAGGCCAAGGTGGCTCGGATCCAGCCCA
GGGGCAGGGGCAGGCCAAAAAGGTCTGTTCAGGCCAGGACTGCAAGGAAGGGCCAGAAAA
GATGCCCCGAGACTGTGGGGCAGAAGAGGAAAAGGGCTGATGAGGAAAAGGATCTTCCTC
CCCGGAAGAGAACACGTCTTGGGCCCCAATCCCCTAAGATGTGGTTAGGACGTGGAACAG
CAAAGCTCCTGAGATTCCAGGCCATCAAGGTGGACAGGAGGTCCTCAGATGATGAGGTGC
GGCAGCAGGCTCAGCAGATCCTCCATGTGAACCTTTCTCCTATAATACAGCTCCAGCCAT
TGCTGCCATAATTGGCACCCTGATGACAGTGTTCGGGGAGACTGAGTCCACTTGTCTGTG
TGGTCATTGTCACAGAGTGCAATGCCCATGGATTCCATAACCCCAAGGACTCTGGGGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IPE2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IPE2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-219, - strand, RNAz p=0.999575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-219, - strand, RNAz p=0.999575

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-362, gnl|bosTau2|chr22 (37687917-37687548)
               

               
               2-362, gnl|Hg17|chr3 (49175962-49175548)
               

               
               2-362, gnl|Mm7|chr9 (108196956-108197307)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-362, gnl|bosTau2|chr22 (37687917-37687548)
               

               
               2-362, gnl|Hg17|chr3 (49175962-49175548)
               

               
               2-362, gnl|Mm7|chr9 (108196956-108197307)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               ese (0.126502)

	2-362, gnl\|bosTau2\|chr22 (37687917-37687548)
	2-362, gnl\|Hg17\|chr3 (49175962-49175548)
	2-362, gnl\|Mm7\|chr9 (108196956-108197307)