Non-Coding RNA Search

Ss1.1-Pig4-TMW8039J23.3

Sequence:


               
               CATTGGGGGCATCATTGCTGCCATCATTGCTACTGCTGTGGCCGCCACGGGCATCCTCAT
CTGTCGGCAGCAGCGGAAGGAGCAGAGGCTGCAGGGGGCTGAGGAGGAGGAGGACCTGGA
GGGGCCTCCCTCATACAAGCCGCCGACGCCCAAGGCGAAGCTGGAGGAGCCAGAGATGCC
TTCCCAGCTCTTCACGCTGGGGGCCTCGGAGCACAGCCCGCTCAAGACTCCCTACTTTGA
TGCTGGCGCCCCATGCCCTGAACAGGAAATGCCTCGATACCATGAGTTGCCCACCTTGGA
AGAGCGGTCAGGGCCCCTGCTGCTTGGGGCCACAAGCGTGGGGTCCCCCATCCTGGTGCC
CCCAGGGCCACCTGCTGCGGAGAGGGTTTCCCTGGATCTGGAGGACGAGGAGGAGGAGGA
AGACTATCTGGACAAGATCAACCCCATCTATGATGCCCTGTCCTACTCCAGCCCCTCTGA
CTCCTACCAGGGCAAAGGGTTTGTCATGTCTCGGGCCATGTATGTGTAAACTGCCATGGC
CCTGGCCTCTCGCCTCTCTTTTTTGATCCCTCAGCTTTCTGCCAGGGATGTAGGACTCCT
TGACCTCTGGCCAGGCCACTGTCAGTTAACACACATGCATCTCATCTGAATTCTACTCCG
GTGGCTCTGCTAAGACTTCTAATCCATGATCTCTGACCCAGAGAAATGGGCCATGACAAT
GGAAACACCTTGACTCTTGAGGGGCTGGGGAAGGTATGTTTCTGCACAACCTCTCACCCA
AGGACCCCTAAGACTGTGACCTTAGATCATACCTCTCATGTCTCACCATCTCCAGATCCA
CCCCCCAAAAAAATCCCAAAGAAGACCCCAGATCGCTGATTTGTCCTCAGACGGTGACTC
CCAGTAGGTCTGCTGGGGTGGGTGTTGGGGGCATCCTGCTGCTCAGACCTGAGCCCTCCA
GGTGGCAGAGCTCCTCTCACCCAGTCCCCACCCTGCCCCCCAAAAGTGGAAGGGAGGGGA
GTCCCCAGCTCAAAGCAGAACTTCCCCATCTCCTCCCTCCTGCAGGCAGGAGTCTCAGGG
TACAGACCCTTCCCTGAGCCCCCACTACCCCATTTCCTATCTACAGGGAACTAAGCCCCA
ACTCAGGGCTACATGGGGTGAGCCTCATGCTGAGTGTGCCTTGCTGACCCCAGCCTTGGG
AGAATTTGCTGTTACTTTGAAAACTACTGAGTCCCTTTACTCCTGTCCAGTGGGATTGGA
CCAAGCATCTCCCTGGATGGGAAAGTGGATCACCTGGGTTTGGGGATGTGATATTGTTTT
GTAATAGAGCATTTCCTACAAGATACAAGTTTGTACTTGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGGGGGCATCATTGCTGCCATCATTGCTACTGCTGTGGCCGCCACGGGCATCCTCAT
CTGTCGGCAGCAGCGGAAGGAGCAGAGGCTGCAGGGGGCTGAGGAGGAGGAGGACCTGGA
GGGGCCTCCCTCATACAAGCCGCCGACGCCCAAGGCGAAGCTGGAGGAGCCAGAGATGCC
TTCCCAGCTCTTCACGCTGGGGGCCTCGGAGCACAGCCCGCTCAAGACTCCCTACTTTGA
TGCTGGCGCCCCATGCCCTGAACAGGAAATGCCTCGATACCATGAGTTGCCCACCTTGGA
AGAGCGGTCAGGGCCCCTGCTGCTTGGGGCCACAAGCGTGGGGTCCCCCATCCTGGTGCC
CCCAGGGCCACCTGCTGCGGAGAGGGTTTCCCTGGATCTGGAGGACGAGGAGGAGGAGGA
AGACTATCTGGACAAGATCAACCCCATCTATGATGCCCTGTCCTACTCCAGCCCCTCTGA
CTCCTACCAGGGCAAAGGGTTTGTCATGTCTCGGGCCATGTATGTGTAAACTGCCATGGC
CCTGGCCTCTCGCCTCTCTTTTTTGATCCCTCAGCTTTCTGCCAGGGATGTAGGACTCCT
TGACCTCTGGCCAGGCCACTGTCAGTTAACACACATGCATCTCATCTGAATTCTACTCCG
GTGGCTCTGCTAAGACTTCTAATCCATGATCTCTGACCCAGAGAAATGGGCCATGACAAT
GGAAACACCTTGACTCTTGAGGGGCTGGGGAAGGTATGTTTCTGCACAACCTCTCACCCA
AGGACCCCTAAGACTGTGACCTTAGATCATACCTCTCATGTCTCACCATCTCCAGATCCA
CCCCCCAAAAAAATCCCAAAGAAGACCCCAGATCGCTGATTTGTCCTCAGACGGTGACTC
CCAGTAGGTCTGCTGGGGTGGGTGTTGGGGGCATCCTGCTGCTCAGACCTGAGCCCTCCA
GGTGGCAGAGCTCCTCTCACCCAGTCCCCACCCTGCCCCCCAAAAGTGGAAGGGAGGGGA
GTCCCCAGCTCAAAGCAGAACTTCCCCATCTCCTCCCTCCTGCAGGCAGGAGTCTCAGGG
TACAGACCCTTCCCTGAGCCCCCACTACCCCATTTCCTATCTACAGGGAACTAAGCCCCA
ACTCAGGGCTACATGGGGTGAGCCTCATGCTGAGTGTGCCTTGCTGACCCCAGCCTTGGG
AGAATTTGCTGTTACTTTGAAAACTACTGAGTCCCTTTACTCCTGTCCAGTGGGATTGGA
CCAAGCATCTCCCTGGATGGGAAAGTGGATCACCTGGGTTTGGGGATGTGATATTGTTTT
GTAATAGAGCATTTCCTACAAGATACAAGTTTGTACTTGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61878725|ref|XP_591474.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61878725|ref|XP_591474.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               382-492, - strand, RNAz p=0.694279
               

               
               868-1178, - strand, RNAz p=0.998827

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               382-492, - strand, RNAz p=0.694279
               

               
               868-1178, - strand, RNAz p=0.998827

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-114, gnl|bosTau2|chr18 (38905418-38905305)
               

               
               1-114, gnl|canFam2|chr1 (113437895-113437635)
               

               
               1-114, gnl|dasNov1|scaffold_47987 (7113-6853)
               

               
               1-114, gnl|hg17|chr19 (50077249-50077517)
               

               
               1-114, gnl|Hg17|chr19 (50077348-50077461)
               

               
               1-114, gnl|loxAfr1|scaffold_95279 (3891-3606)
               

               
               1-114, gnl|mm7|chr7 (17403938-17403686)
               

               
               1-114, gnl|Mm7|chr7 (17403840-17403727)
               

               
               1-114, gnl|monDom2|scaffold_221 (217722-217445)
               

               
               1-114, gnl|oryCun1|scaffold_183908 (6415-6158)
               

               
               1-114, gnl|panTro1|chr20 (47217138-47217406)
               

               
               1-114, gnl|rheMac2|chr19 (51310419-51310688)
               

               
               1-114, gnl|rn3|chr1 (79106490-79106222)
               


               
               263-1358, gnl|bosTau2|chr18 (38901039-38899945)
               

               
               263-1358, gnl|Hg17|chr19 (50083204-50084317)
               

               
               263-1358, gnl|Mm7|chr7 (17400164-17399042)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-114, gnl|bosTau2|chr18 (38905418-38905305)
               

               
               1-114, gnl|canFam2|chr1 (113437895-113437635)
               

               
               1-114, gnl|dasNov1|scaffold_47987 (7113-6853)
               

               
               1-114, gnl|hg17|chr19 (50077249-50077517)
               

               
               1-114, gnl|Hg17|chr19 (50077348-50077461)
               

               
               1-114, gnl|loxAfr1|scaffold_95279 (3891-3606)
               

               
               1-114, gnl|mm7|chr7 (17403938-17403686)
               

               
               1-114, gnl|Mm7|chr7 (17403840-17403727)
               

               
               1-114, gnl|monDom2|scaffold_221 (217722-217445)
               

               
               1-114, gnl|oryCun1|scaffold_183908 (6415-6158)
               

               
               1-114, gnl|panTro1|chr20 (47217138-47217406)
               

               
               1-114, gnl|rheMac2|chr19 (51310419-51310688)
               

               
               1-114, gnl|rn3|chr1 (79106490-79106222)
               


               
               263-1358, gnl|bosTau2|chr18 (38901039-38899945)
               

               
               263-1358, gnl|Hg17|chr19 (50083204-50084317)
               

               
               263-1358, gnl|Mm7|chr7 (17400164-17399042)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               nlu (0.383362)
               

               
               cga (0.279096)
               

               
               ebs (0.236602)
               

               
               cty (0.20816)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               cga (0.279096)
               

               
               ebs (0.236602)
               

               
               cty (0.20816)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	382-492, - strand, RNAz p=0.694279
	868-1178, - strand, RNAz p=0.998827

	1-114, gnl\|bosTau2\|chr18 (38905418-38905305)
	1-114, gnl\|canFam2\|chr1 (113437895-113437635)
	1-114, gnl\|dasNov1\|scaffold_47987 (7113-6853)
	1-114, gnl\|hg17\|chr19 (50077249-50077517)
	1-114, gnl\|Hg17\|chr19 (50077348-50077461)
	1-114, gnl\|loxAfr1\|scaffold_95279 (3891-3606)
	1-114, gnl\|mm7\|chr7 (17403938-17403686)
	1-114, gnl\|Mm7\|chr7 (17403840-17403727)
	1-114, gnl\|monDom2\|scaffold_221 (217722-217445)
	1-114, gnl\|oryCun1\|scaffold_183908 (6415-6158)
	1-114, gnl\|panTro1\|chr20 (47217138-47217406)
	1-114, gnl\|rheMac2\|chr19 (51310419-51310688)
	1-114, gnl\|rn3\|chr1 (79106490-79106222)

	263-1358, gnl\|bosTau2\|chr18 (38901039-38899945)
	263-1358, gnl\|Hg17\|chr19 (50083204-50084317)
	263-1358, gnl\|Mm7\|chr7 (17400164-17399042)

	nlu (0.383362)
	cga (0.279096)
	ebs (0.236602)
	cty (0.20816)
	lnt (0.142308)
	nmm (0.132802)
	ute (0.132784)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)